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PyMVPA: Python MultiVariate Pattern Analysis
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Identifier Index
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P
Q
R
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_
]
A
abbr()
(in
Label
)
alpha
(in
_GLMNET
)
asdict()
(in
Hamster
)
absminDistance()
(in
mvpa.clfs.distance
)
analyzer
(in
ProxyClassifierSensitivityAnalyzer
)
asstring()
(in
ConfusionMatrix
)
Absolute()
(in
mvpa.misc.transformers
)
analyzers
(in
CombinedFeaturewiseDatasetMeasure
)
asstring()
(in
RegressionStatistics
)
active
(in
SetLogger
)
anova
(in
mvpa.measures
)
asstring()
(in
SummaryStatistics
)
AdaptiveNormal
(in
mvpa.clfs.stats
)
apply()
(in
Linear
)
Atlas()
(in
mvpa.atlases.warehouse
)
AdaptiveNullDist
(in
mvpa.clfs.stats
)
apply()
(in
MNI2Tal_MatthewBrett
)
atlases
(in
mvpa
)
AdaptiveRDist
(in
mvpa.clfs.stats
)
apply()
(in
TransformationBase
)
AtlasesTests
(in
mvpa.tests.test_atlases
)
add()
(in
SummaryStatistics
)
applyMapper()
(in
Dataset
)
attributes
(in
mvpa.misc
)
add()
(in
OptionGroups
)
applyMapper()
(in
MetaDataset
)
AttributesCollector
(in
mvpa.misc.state
)
add()
(in
Collection
)
args
(in
mvpa.misc
)
AttributesCollector
(in
mvpa.misc.state
)
aggregateFeatures()
(in
mvpa.datasets.miscfx
)
ArgsHelpersTest
(in
mvpa.tests.test_args
)
AttributeWithUnique
(in
mvpa.misc.attributes
)
algorithms
(in
mvpa
)
arr
(in
mvpa.support.stats
)
AUCErrorFx
(in
mvpa.misc.errorfx
)
alignment
(in
Hyperalignment
)
array
(in
mvpa.mappers
)
aucs()
(in
ROCCurve
)
all_label_counts
(in
MaximalVote
)
asDescreteTime()
(in
Event
)
autoNullDist()
(in
mvpa.clfs.stats
)
B
bad_classifiers
(in
mvpa.clfs.warehouse
)
base
(in
mvpa.misc.plot
)
BlankClass
(in
mvpa.tests.test_params
)
base
(in
mvpa.atlases
)
base_sensitivities
(in
FeaturewiseDatasetMeasure
)
blr
(in
mvpa.clfs
)
base
(in
mvpa
)
BaseAtlas
(in
mvpa.atlases.base
)
BLR
(in
mvpa.clfs.blr
)
base
(in
mvpa.clfs
)
BestDetector
(in
mvpa.featsel.helpers
)
BoostedClassifier
(in
mvpa.clfs.meta
)
base
(in
mvpa.datasets
)
bestindex
(in
BestDetector
)
BoostedClassifierSensitivityAnalyzer
(in
mvpa.measures.base
)
base
(in
mvpa.featsel
)
bias
(in
StaticDatasetMeasure
)
boxcar
(in
mvpa.mappers
)
base
(in
mvpa.mappers
)
biases
(in
LinearSVMWeights
)
BoxcarMapper
(in
mvpa.mappers.boxcar
)
base
(in
mvpa.measures
)
biases
(in
LinearSVMWeights
)
BoxcarMapperTests
(in
mvpa.tests.test_boxcarmapper
)
base
(in
mvpa.misc.bv
)
biases
(in
SMLR
)
BrainVoyagerRTC
(in
mvpa.misc.bv.base
)
base
(in
mvpa.misc.fsl
)
biases
(in
SMLRWeights
)
bv
(in
mvpa.misc
)
base
(in
mvpa.misc.io
)
BinaryClassifier
(in
mvpa.clfs.meta
)
C
C
(in
MixedClass
)
coarsenChunks()
(in
mvpa.datasets.miscfx
)
compute_lml_gradient_logscale()
(in
KernelLinear
)
C
(in
SimpleClass
)
CollectableAttribute
(in
mvpa.misc.attributes
)
compute_lml_gradient_logscale()
(in
KernelSquaredExponential
)
c_darray
(in
mvpa.clfs.libsmlrc.ctypes_helper
)
Collection
(in
mvpa.misc.state
)
compute_log_marginal_likelihood()
(in
BLR
)
c_farray
(in
mvpa.clfs.libsmlrc.ctypes_helper
)
collectTestSuites()
(in
mvpa.tests
)
compute_log_marginal_likelihood()
(in
GPR
)
c_iarray
(in
mvpa.clfs.libsmlrc.ctypes_helper
)
ColumnData
(in
mvpa.misc.io.base
)
compute_M_H()
(in
IterativeRelief
)
c_larray
(in
mvpa.clfs.libsmlrc.ctypes_helper
)
combined_analyzer
(in
BoostedClassifierSensitivityAnalyzer
)
compute_M_H()
(in
IterativeRelief_Devel
)
C_SVC
(in
mvpa.clfs.libsvmc.svmc
)
CombinedClassifier
(in
mvpa.clfs.meta
)
config
(in
mvpa.base
)
cartesianDistance()
(in
mvpa.clfs.distance
)
CombinedFeatureSelection
(in
mvpa.featsel.base
)
ConfigManager
(in
mvpa.base.config
)
cdf()
(in
AdaptiveRDist
)
CombinedFeaturewiseDatasetMeasure
(in
mvpa.measures.base
)
ConfigTests
(in
mvpa.tests.test_config
)
cdf()
(in
FixedNullDist
)
CombinedMapper
(in
mvpa.mappers.base
)
confusion
(in
CrossValidatedTransferError
)
cdf()
(in
MCNullDist
)
combiner
(in
CrossValidatedTransferError
)
confusion
(in
SplitClassifier
)
cdf()
(in
Nonparametric
)
combiner
(in
CombinedClassifier
)
confusion
(in
ClassifierError
)
cdf()
(in
NullDist
)
combiner
(in
CombinedFeatureSelection
)
ConfusionBasedError
(in
mvpa.clfs.transerror
)
cfg
(in
mvpa.base
)
combiner()
(in
FeaturewiseDatasetMeasure
)
ConfusionMatrix
(in
mvpa.clfs.transerror
)
ChainMapper
(in
mvpa.mappers.base
)
combiner()
(in
FeaturewiseDatasetMeasure
)
convergence_tol
(in
SMLR
)
channel
(in
mvpa.datasets
)
combiner1
(in
Hyperalignment
)
ConvergenceError
(in
mvpa.misc.exceptions
)
ChannelDataset
(in
mvpa.datasets.channel
)
combiner2
(in
Hyperalignment
)
convert2SVMNode()
(in
mvpa.clfs.libsvmc._svm
)
channelids
(in
ChannelDataset
)
common_variance
(in
GNB
)
convertFeatureIds2FeatureMask()
(in
Dataset
)
channels
(in
EEPBin
)
commonopts_list
(in
mvpa.misc.cmdline
)
convertFeatureMask2FeatureIds()
(in
Dataset
)
checkRange()
(in
mvpa.atlases.base
)
compatmask
(in
DescreteMetric
)
convertOutIds2InMask()
(in
MaskMapper
)
chirpLinear()
(in
mvpa.misc.data_generators
)
CompoundOneWayAnova
(in
mvpa.measures.anova
)
convertOutIds2InMask()
(in
MaskMapper
)
chisquare()
(in
mvpa.misc.stats
)
compute()
(in
Kernel
)
convertOutIds2OutMask()
(in
MaskMapper
)
Classifier
(in
mvpa.clfs.base
)
compute()
(in
KernelConstant
)
convertOutIds2OutMask()
(in
MaskMapper
)
ClassifierCombiner
(in
mvpa.clfs.meta
)
compute()
(in
KernelExponential
)
coord()
(in
Label
)
ClassifierError
(in
mvpa.clfs.transerror
)
compute()
(in
KernelLinear
)
coordT
(in
XMLBasedAtlas
)
ClassifiersTests
(in
mvpa.tests.test_clf
)
compute()
(in
KernelMatern_3_2
)
copy
(in
mvpa.support
)
ClassWithCollections
(in
mvpa.misc.state
)
compute()
(in
KernelRationalQuadratic
)
copy()
(in
Dataset
)
clean()
(in
MCNullDist
)
compute()
(in
KernelSquaredExponential
)
copy()
(in
mvpa.support._copy
)
clear()
(in
Report
)
compute()
(in
SummaryStatistics
)
corrcoef
(in
mvpa.measures
)
clf
(in
ProxyClassifier
)
compute_gradient()
(in
Kernel
)
CorrCoef
(in
mvpa.measures.corrcoef
)
clf
(in
Sensitivity
)
compute_gradient_log_marginal_likelihood()
(in
GPR
)
CorrErrorFx
(in
mvpa.misc.errorfx
)
clf()
(in
ClassifierError
)
compute_gradient_log_marginal_likelihood_logscale()
(in
GPR
)
CorrErrorPFx
(in
mvpa.misc.errorfx
)
clf_sensitivities
(in
ProxyClassifierSensitivityAnalyzer
)
compute_lml_gradient()
(in
Kernel
)
corrstability
(in
mvpa.measures
)
clfs
(in
mvpa
)
compute_lml_gradient()
(in
KernelConstant
)
CorrStability
(in
mvpa.measures.corrstability
)
clfs
(in
BoostedClassifier
)
compute_lml_gradient()
(in
KernelExponential
)
count()
(in
Label
)
clfswh
(in
mvpa.clfs.warehouse
)
compute_lml_gradient()
(in
KernelLinear
)
CrossValidatedTransferError
(in
mvpa.algorithms.cvtranserror
)
clone()
(in
Classifier
)
compute_lml_gradient()
(in
KernelSquaredExponential
)
CrossValidationTests
(in
mvpa.tests.test_clfcrossval
)
clone()
(in
Classifier
)
compute_lml_gradient_logscale()
(in
Kernel
)
ctypes_helper
(in
mvpa.clfs.libsmlrc
)
cmdline
(in
mvpa.misc
)
compute_lml_gradient_logscale()
(in
KernelConstant
)
CustomSplitter
(in
mvpa.datasets.splitters
)
CmdlineHelpersTest
(in
mvpa.tests.test_cmdline
)
compute_lml_gradient_logscale()
(in
KernelExponential
)
cvtranserror
(in
mvpa.algorithms
)
D
D
(in
MixedClass
)
defineFeatureGroups()
(in
Dataset
)
DochelpersTests
(in
mvpa.tests.test_dochelpers
)
data
(in
DataReader
)
DegenerateInputError
(in
mvpa.clfs.base
)
double_getitem
(in
mvpa.clfs.libsvmc.svmc
)
data_generators
(in
mvpa.misc
)
delete_double
(in
mvpa.clfs.libsvmc.svmc
)
double_setitem
(in
mvpa.clfs.libsvmc.svmc
)
DataReader
(in
mvpa.misc.io.base
)
delete_int
(in
mvpa.clfs.libsvmc.svmc
)
doubleArray()
(in
mvpa.clfs.libsvmc._svm
)
Dataset
(in
mvpa.datasets.base
)
DenseArrayMapper
(in
mvpa.mappers.array
)
doubleArray2List()
(in
mvpa.clfs.libsvmc._svm
)
DatasetAttribute
(in
mvpa.misc.attributes
)
DenseArrayMapperTests
(in
mvpa.tests.test_arraymapper
)
doubleGammaHRF()
(in
mvpa.misc.fx
)
DatasetError
(in
mvpa.misc.exceptions
)
descr
(in
ClassWithCollections
)
doubleppcarray2numpy_array
(in
mvpa.clfs.libsvmc.svmc
)
DatasetMeasure
(in
mvpa.measures.base
)
DescreteMetric
(in
mvpa.mappers.metric
)
ds
(in
mvpa.measures
)
datasetmethod()
(in
mvpa.datasets.base
)
design2labels()
(in
mvpa.misc.io.base
)
dsa
(in
_Dataset
)
datasets
(in
mvpa
)
detrend()
(in
mvpa.datasets.miscfx_sp
)
DSMatrix
(in
mvpa.misc.stats
)
datasets
(in
MetaDataset
)
disable()
(in
StateCollection
)
DSMDatasetMeasure
(in
mvpa.measures.ds
)
datasets
(in
mvpa.tests.tests_warehouse
)
discardOut()
(in
MaskMapper
)
dt
(in
ChannelDataset
)
DatasetTests
(in
mvpa.tests.test_dataset
)
discardOut()
(in
MaskMapper
)
dt
(in
NiftiDataset
)
debug
(in
mvpa.base
)
dist_samples
(in
MCNullDist
)
dt
(in
EEPBin
)
DebugLogger
(in
mvpa.base.verbosity
)
distance
(in
ReferencesAtlas
)
dumbFeatureBinaryDataset()
(in
mvpa.misc.data_generators
)
deepcopy()
(in
mvpa.support._copy
)
distance
(in
mvpa.clfs
)
dumbFeatureDataset()
(in
mvpa.misc.data_generators
)
default
(in
Parameter
)
DistPValue
(in
mvpa.misc.transformers
)
dump()
(in
Hamster
)
default_backend
(in
mvpa.clfs.svm
)
doc()
(in
Parameter
)
durations
(in
FslEV3
)
default_parameters
(in
SVMParameter
)
dochelpers
(in
mvpa.base
)
E
eep
(in
mvpa.datasets
)
ENETWeights
(in
mvpa.clfs.enet
)
errorfx()
(in
TransferError
)
eepbin
(in
mvpa.misc.io
)
enhancedDocString()
(in
mvpa.base.dochelpers
)
errors
(in
IFS
)
EEPBin
(in
mvpa.misc.io.eepbin
)
eps64
(in
mvpa.clfs.gpr
)
errors
(in
RFE
)
EEPDataset
(in
mvpa.datasets.eep
)
EPSILON_SVR
(in
mvpa.clfs.libsvmc.svmc
)
ErrorsTests
(in
mvpa.tests.test_transerror
)
EEPDatasetTests
(in
mvpa.tests.test_eepdataset
)
equalDefault()
(in
Parameter
)
escapeXML()
(in
mvpa.base.report
)
ElementSelector
(in
mvpa.featsel.helpers
)
ERNiftiDataset
(in
mvpa.datasets.nifti
)
event
(in
mvpa.datasets
)
elementsize
(in
DescreteMetric
)
erp
(in
mvpa.misc.plot
)
Event
(in
mvpa.misc.support
)
enable()
(in
StateVariable
)
Error
(in
mvpa.support._copy
)
EventDataset
(in
mvpa.datasets.event
)
enable()
(in
StateCollection
)
error()
(in
mvpa.base
)
exceptions
(in
mvpa.misc
)
enabled
(in
StateCollection
)
error()
(in
ConfusionMatrix
)
exists()
(in
mvpa.base.externals
)
enet
(in
mvpa.clfs
)
error()
(in
RegressionStatistics
)
extend_args()
(in
mvpa.clfs.libsmlrc.ctypes_helper
)
ENET
(in
mvpa.clfs.enet
)
error()
(in
SummaryStatistics
)
extent
(in
XMLBasedAtlas
)
ENETTests
(in
mvpa.tests.test_enet
)
errorfx
(in
mvpa.misc
)
externals
(in
mvpa.base
)
F
fa
(in
_Dataset
)
find()
(in
LabelsLevel
)
forward()
(in
BoxcarMapper
)
FailedToPredictError
(in
mvpa.clfs.base
)
find()
(in
FSLProbabilisticAtlas
)
forward()
(in
LLEMapper
)
FailedToTrainError
(in
mvpa.clfs.base
)
FirstAxisMean()
(in
mvpa.misc.transformers
)
forward()
(in
MaskMapper
)
family
(in
_GLMNET
)
FirstAxisSumNotZero()
(in
mvpa.misc.transformers
)
forward()
(in
MaskMapper
)
featsel
(in
mvpa
)
fit()
(in
AdaptiveNullDist
)
forward()
(in
SampleGroupMapper
)
feature_ids
(in
Classifier
)
fit()
(in
FixedNullDist
)
forward()
(in
SimpleSOMMapper
)
feature_ids()
(in
Sensitivity
)
fit()
(in
MCNullDist
)
forward()
(in
_WaveletMapper
)
feature_ids()
(in
Sensitivity
)
fit()
(in
Nonparametric
)
FractionTailSelector
(in
mvpa.featsel.helpers
)
feature_selection
(in
FeatureSelectionClassifier
)
fit()
(in
NullDist
)
freeDoubleArray()
(in
mvpa.clfs.libsvmc._svm
)
feature_selections
(in
CombinedFeatureSelection
)
fit()
(in
rv_semifrozen
)
freeIntArray()
(in
mvpa.clfs.libsvmc._svm
)
feature_selections
(in
FeatureSelectionPipeline
)
fit_all_weights
(in
SMLR
)
fsl
(in
mvpa.atlases
)
FeatureAttribute
(in
mvpa.misc.attributes
)
FixedErrorThresholdStopCrit
(in
mvpa.featsel.helpers
)
fsl
(in
mvpa.misc
)
FeatureSelection
(in
mvpa.featsel.base
)
FixedNElementTailSelector
(in
mvpa.featsel.helpers
)
FSLAtlas
(in
mvpa.atlases.fsl
)
FeatureSelectionClassifier
(in
mvpa.clfs.meta
)
FixedNullDist
(in
mvpa.clfs.stats
)
FslEV3
(in
mvpa.misc.fsl.base
)
FeatureSelectionClassifierSensitivityAnalyzer
(in
mvpa.measures.base
)
flobs
(in
mvpa.misc.fsl
)
FslGLMDesign
(in
mvpa.misc.fsl.base
)
FeatureSelectionPipeline
(in
mvpa.featsel.base
)
flowbreak()
(in
Report
)
FSLLabelsAtlas
(in
mvpa.atlases.fsl
)
FeaturewiseDatasetMeasure
(in
mvpa.measures.base
)
forward()
(in
ChainMapper
)
FSLProbabilisticAtlas
(in
mvpa.atlases.fsl
)
felements
(in
FractionTailSelector
)
forward()
(in
CombinedMapper
)
funcdata
(in
MelodicResults
)
figure()
(in
Report
)
forward()
(in
Mapper
)
fx
(in
mvpa.misc
)
figures()
(in
Report
)
forward()
(in
ProjectionMapper
)
filter_coord
(in
DescreteMetric
)
forward()
(in
ProjectionMapper
)
G
generateFromXML()
(in
Label
)
getMetric()
(in
Mapper
)
getRho()
(in
SVMModel
)
generateFromXML()
(in
LabelsLevel
)
getMetric()
(in
DSMatrix
)
getSamplesPerChunkLabel()
(in
mvpa.datasets.miscfx
)
generateFromXML()
(in
Level
)
getMVPattern()
(in
mvpa.misc.data_generators
)
getSensitivityAnalyzer()
(in
_SVM
)
generateFromXML()
(in
ReferencesLevel
)
getNColumns()
(in
ColumnData
)
getSensitivityAnalyzer()
(in
_SVM
)
get()
(in
ConfigManager
)
getNeighbor()
(in
ChainMapper
)
getSensitivityAnalyzer()
(in
Classifier
)
get()
(in
Collection
)
getNeighbor()
(in
CombinedMapper
)
getSensitivityAnalyzer()
(in
Classifier
)
get_argtypes()
(in
mvpa.clfs.libsmlrc.ctypes_helper
)
getNeighbor()
(in
Mapper
)
getSensitivityAnalyzer()
(in
ENET
)
getAsDType()
(in
ConfigManager
)
getNeighbor()
(in
Mapper
)
getSensitivityAnalyzer()
(in
_GLMNET
)
getboolean()
(in
ConfigManager
)
getNeighbor()
(in
Metric
)
getSensitivityAnalyzer()
(in
GPR
)
getBreakPoints()
(in
mvpa.misc.support
)
getNeighborIn()
(in
Mapper
)
getSensitivityAnalyzer()
(in
LARS
)
getData()
(in
DataReader
)
getNeighborIn()
(in
Mapper
)
getSensitivityAnalyzer()
(in
BoostedClassifier
)
getData()
(in
IFSTests
)
getNeighbors()
(in
Mapper
)
getSensitivityAnalyzer()
(in
FeatureSelectionClassifier
)
getData()
(in
RFETests
)
getNeighbors()
(in
Mapper
)
getSensitivityAnalyzer()
(in
MappedClassifier
)
getDataT()
(in
RFETests
)
getNeighbors()
(in
DescreteMetric
)
getSensitivityAnalyzer()
(in
ProxyClassifier
)
getDt()
(in
NiftiDataset
)
getNeighbors()
(in
Metric
)
getSensitivityAnalyzer()
(in
SplitClassifier
)
getEV()
(in
FslEV3
)
getNEVs()
(in
FslEV3
)
getSensitivityAnalyzer()
(in
SMLR
)
getFullMatrix()
(in
DSMatrix
)
getNFeatures()
(in
Dataset
)
getSV()
(in
SVMModel
)
getInId()
(in
Mapper
)
getNFeatures()
(in
_Dataset
)
getSVCoef()
(in
SVMModel
)
getInId()
(in
Mapper
)
getNFeatures()
(in
MetaDataset
)
getSVRPdf()
(in
SVMModel
)
getInId()
(in
MaskMapper
)
getNiftiData()
(in
mvpa.datasets.nifti
)
getSVRProbability()
(in
SVMModel
)
getInId()
(in
MaskMapper
)
getNiftiFromAnySource()
(in
mvpa.datasets.nifti
)
getTotalNSV()
(in
SVMModel
)
getInId()
(in
SimpleSOMMapper
)
getNRClass()
(in
SVMModel
)
getTriangle()
(in
DSMatrix
)
getInIds()
(in
MaskMapper
)
getNRows()
(in
ColumnData
)
getUniqueLengthNCombinations()
(in
mvpa.misc.support
)
getInIds()
(in
MaskMapper
)
getNSamples()
(in
Dataset
)
getVectorForm()
(in
DSMatrix
)
getInSize()
(in
ChainMapper
)
getNSamples()
(in
_Dataset
)
getWeightedVote()
(in
kNN
)
getInSize()
(in
CombinedMapper
)
getNSamples()
(in
MetaDataset
)
glm
(in
mvpa.measures
)
getInSize()
(in
Mapper
)
getNSamples()
(in
SampleAttributes
)
GLM
(in
mvpa.measures.glm
)
getInSize()
(in
ProjectionMapper
)
getNSV()
(in
SVMModel
)
glmnet
(in
mvpa.clfs
)
getInSize()
(in
ProjectionMapper
)
getOutId()
(in
MaskMapper
)
GLMNET_C
(in
mvpa.clfs.glmnet
)
getInSize()
(in
BoxcarMapper
)
getOutId()
(in
MaskMapper
)
GLMNET_R
(in
mvpa.clfs.glmnet
)
getInSize()
(in
LLEMapper
)
getOutSize()
(in
ChainMapper
)
GLMNETWeights
(in
mvpa.clfs.glmnet
)
getInSize()
(in
MaskMapper
)
getOutSize()
(in
CombinedMapper
)
gnb
(in
mvpa.clfs
)
getInSize()
(in
MaskMapper
)
getOutSize()
(in
Mapper
)
GNB
(in
mvpa.clfs.gnb
)
getInSize()
(in
SampleGroupMapper
)
getOutSize()
(in
ProjectionMapper
)
GNBTests
(in
mvpa.tests.test_gnb
)
getInSize()
(in
SimpleSOMMapper
)
getOutSize()
(in
ProjectionMapper
)
gpr
(in
mvpa.clfs
)
getInSize()
(in
_WaveletMapper
)
getOutSize()
(in
BoxcarMapper
)
GPR
(in
mvpa.clfs.gpr
)
getLabels()
(in
SVMModel
)
getOutSize()
(in
LLEMapper
)
GPRLinearWeights
(in
mvpa.clfs.gpr
)
getLabels_map()
(in
ConfusionMatrix
)
getOutSize()
(in
MaskMapper
)
GPRTests
(in
mvpa.tests.test_gpr
)
getLabelsMap()
(in
Dataset
)
getOutSize()
(in
MaskMapper
)
GPRWeights
(in
mvpa.clfs.gpr
)
getMajorityVote()
(in
kNN
)
getOutSize()
(in
SampleGroupMapper
)
gradient()
(in
KernelExponential
)
getMap()
(in
FSLProbabilisticAtlas
)
getOutSize()
(in
SimpleSOMMapper
)
gradient()
(in
KernelMatern_3_2
)
getMaps()
(in
FSLProbabilisticAtlas
)
getOutSize()
(in
_WaveletMapper
)
gradient()
(in
KernelRationalQuadratic
)
getMask()
(in
MaskMapper
)
getPropsAsDict()
(in
DataReader
)
GrandMean()
(in
mvpa.misc.transformers
)
getMask()
(in
MaskMapper
)
getRandomSamples()
(in
Dataset
)
griddata
(in
mvpa.support
)
getMetric()
(in
Mapper
)
getRandomSamples()
(in
MetaDataset
)
group_kwargs()
(in
mvpa.misc.args
)
H
HalfSplitter
(in
mvpa.datasets.splitters
)
harvest_attribs
(in
Harvestable
)
hasunique
(in
AttributeWithUnique
)
hamster
(in
mvpa.misc.io
)
Harvestable
(in
mvpa.misc.state
)
header_def
(in
McFlirtParams
)
Hamster
(in
mvpa.misc.io.hamster
)
harvested
(in
Harvestable
)
helpers
(in
mvpa.featsel
)
HamsterHelperTests
(in
mvpa.tests.test_hamster
)
Harvester
(in
mvpa.misc.support
)
hyperalignment
(in
mvpa.algorithms
)
handleDocString()
(in
mvpa.base.dochelpers
)
HarvesterCall
(in
mvpa.misc.support
)
Hyperalignment
(in
mvpa.algorithms.hyperalignment
)
handlers
(in
Logger
)
has_bias
(in
SMLR
)
HyperAlignmentTests
(in
mvpa.tests.test_hyperalignment
)
I
ic
(in
MelodicResults
)
initSimple()
(in
_Dataset
)
isSorted()
(in
mvpa.misc.support
)
ica
(in
mvpa.mappers
)
int_getitem
(in
mvpa.clfs.libsvmc.svmc
)
isTrained()
(in
Classifier
)
ICAMapper
(in
mvpa.mappers.ica
)
int_setitem
(in
mvpa.clfs.libsvmc.svmc
)
isTrained()
(in
Classifier
)
ICAMapperTests
(in
mvpa.tests.test_icamapper
)
intArray()
(in
mvpa.clfs.libsvmc._svm
)
isValidInId()
(in
Mapper
)
icastats
(in
MelodicResults
)
intArray2List()
(in
mvpa.clfs.libsvmc._svm
)
isValidInId()
(in
Mapper
)
Identity()
(in
mvpa.misc.transformers
)
intensities
(in
FslEV3
)
isValidInId()
(in
BoxcarMapper
)
idhash()
(in
Dataset
)
internals()
(in
Warehouse
)
isValidInId()
(in
MaskMapper
)
idhash()
(in
mvpa.misc.support
)
InvalidHyperparameterError
(in
mvpa.misc.exceptions
)
isValidInId()
(in
MaskMapper
)
idsonboundaries()
(in
Dataset
)
inverseCmap()
(in
mvpa.misc.plot.base
)
isValidOutId()
(in
Mapper
)
ifs
(in
mvpa.featsel
)
io
(in
mvpa.misc
)
isValidOutId()
(in
Mapper
)
IFS
(in
mvpa.featsel.ifs
)
IOHelperTests
(in
mvpa.tests.test_iohelpers
)
isValidOutId()
(in
BoxcarMapper
)
IFSTests
(in
mvpa.tests.test_ifs
)
irelief
(in
mvpa.measures
)
isValidOutId()
(in
SimpleSOMMapper
)
implementation
(in
SMLR
)
isActive()
(in
StateCollection
)
items
(in
Collection
)
indent
(in
LevelLogger
)
isDefault()
(in
Parameter
)
items()
(in
Warehouse
)
indentDoc()
(in
mvpa.misc.support
)
isEnabled()
(in
StateVariable
)
IterativeRelief
(in
mvpa.measures.irelief
)
index()
(in
Label
)
isEnabled()
(in
StateCollection
)
IterativeRelief_Devel
(in
mvpa.measures.irelief
)
index()
(in
LabelsLevel
)
isInVolume()
(in
mvpa.misc.support
)
IterativeReliefOnline
(in
mvpa.measures.irelief
)
index()
(in
Dataset
)
isKnown()
(in
Collection
)
IterativeReliefOnline_Devel
(in
mvpa.measures.irelief
)
indexes()
(in
ReferencesLevel
)
isSet()
(in
CollectableAttribute
)
info
(in
mvpa.base
)
isSet()
(in
Collection
)
K
K
(in
SimpleSOMMapper
)
KernelLinear
(in
mvpa.clfs.kernel
)
kNN
(in
mvpa.clfs.knn
)
k()
(in
IterativeRelief
)
KernelMatern_3_2
(in
mvpa.clfs.kernel
)
KNNTests
(in
mvpa.tests.test_knn
)
kernel
(in
GPR
)
KernelMatern_5_2
(in
mvpa.clfs.kernel
)
KNOWN_ATLAS_FAMILIES
(in
mvpa.atlases.warehouse
)
kernel
(in
mvpa.clfs
)
KernelParameter
(in
mvpa.misc.param
)
KNOWN_ATLASES
(in
mvpa.atlases.warehouse
)
Kernel
(in
mvpa.clfs.kernel
)
KernelRationalQuadratic
(in
mvpa.clfs.kernel
)
known_models
(in
mvpa.clfs.lars
)
kernel_dictionary
(in
mvpa.clfs.kernel
)
KernelSquaredExponential
(in
mvpa.clfs.kernel
)
kp1
(in
ParametrizedClassifier
)
KernelConstant
(in
mvpa.clfs.kernel
)
KernelTests
(in
mvpa.tests.test_kernel
)
KernelExponential
(in
mvpa.clfs.kernel
)
knn
(in
mvpa.clfs
)
L
L1Normed()
(in
mvpa.misc.transformers
)
LearnerError
(in
mvpa.clfs.base
)
linear_awgn()
(in
mvpa.misc.data_generators
)
L2Normed()
(in
mvpa.misc.transformers
)
leastSqFit()
(in
mvpa.misc.fx
)
LinearCSVMC
(in
mvpa.clfs.svm
)
Label
(in
mvpa.atlases.base
)
legendre_()
(in
mvpa.datasets.miscfx_sp
)
LinearNuSVMC
(in
mvpa.clfs.svm
)
labelPoint()
(in
XMLBasedAtlas
)
length_scale
(in
KernelSquaredExponential
)
linearSVMC
(in
mvpa.clfs.warehouse
)
labelPoint()
(in
XMLBasedAtlas
)
Less1Classifier
(in
mvpa.tests.tests_warehouse_clfs
)
LinearSVMWeights
(in
mvpa.clfs.libsvmc.sens
)
labels()
(in
LabelsLevel
)
Level
(in
mvpa.atlases.base
)
LinearSVMWeights
(in
mvpa.clfs.sg.sens
)
labels()
(in
ClassifierError
)
level
(in
LevelLogger
)
listing
(in
Collection
)
labels()
(in
ConfusionMatrix
)
LevelLogger
(in
mvpa.base.verbosity
)
listing()
(in
Warehouse
)
labels2chunks()
(in
mvpa.misc.io.base
)
levels
(in
Hyperalignment
)
lle
(in
mvpa.mappers
)
labels_map
(in
ConfusionMatrix
)
levels_dict
(in
XMLBasedAtlas
)
LLEMapper
(in
mvpa.mappers.lle
)
labels_map
(in
Dataset
)
levelsListing()
(in
ReferencesAtlas
)
lm
(in
GPR
)
LabelsAtlas
(in
mvpa.atlases.base
)
levelsListing()
(in
XMLBasedAtlas
)
lm
(in
SMLR
)
LabelsLevel
(in
mvpa.atlases.base
)
levelsListing()
(in
XMLBasedAtlas
)
loadAtlas()
(in
XMLBasedAtlas
)
labelVoxel()
(in
LabelsAtlas
)
levelType
(in
Level
)
loadAtlas()
(in
XMLBasedAtlas
)
labelVoxel()
(in
ReferencesAtlas
)
lfprev
(in
Logger
)
locations()
(in
SensorLocations
)
labelVoxel()
(in
FSLProbabilisticAtlas
)
libsmlrc
(in
mvpa.clfs
)
log_marginal_likelihood
(in
BLR
)
lars
(in
mvpa.clfs
)
libsvmc
(in
mvpa.clfs
)
log_marginal_likelihood
(in
GPR
)
LARS
(in
mvpa.clfs.lars
)
Linear
(in
mvpa.atlases.transformation
)
log_marginal_likelihood_gradient
(in
GPR
)
LARSTests
(in
mvpa.tests.test_lars
)
LINEAR
(in
mvpa.clfs.libsvmc.svmc
)
Logger
(in
mvpa.base.verbosity
)
LARSWeights
(in
mvpa.clfs.lars
)
linear1d_gaussian_noise()
(in
mvpa.misc.data_generators
)
logprob
(in
GNB
)
M
mahalanobisDistance()
(in
mvpa.clfs.distance
)
MaskedDataset
(in
mvpa.datasets.masked
)
metric
(in
mvpa.mappers
)
main
(in
mvpa.tests
)
MaskedDatasetTests
(in
mvpa.tests.test_maskeddataset
)
Metric
(in
mvpa.mappers.metric
)
main()
(in
mvpa.tests.main
)
MaskMapper
(in
mvpa.mappers.mask
)
metrics
(in
DebugLogger
)
makeFlobs()
(in
mvpa.misc.fsl.flobs
)
matchDistribution()
(in
mvpa.clfs.stats
)
MetricTests
(in
mvpa.tests.test_neighbor
)
manhattenDistance()
(in
mvpa.clfs.distance
)
matrices()
(in
ConfusionMatrix
)
min_resamp
(in
SMLR
)
map2Nifti()
(in
ERNiftiDataset
)
matrix()
(in
ConfusionMatrix
)
misc
(in
mvpa
)
map2Nifti()
(in
NiftiDataset
)
max_log_marginal_likelihood()
(in
ModelSelector
)
MiscDatasetFxSpTests
(in
mvpa.tests.test_datasetfx_sp
)
mapForward()
(in
MappedDataset
)
maxcount
(in
WarningLog
)
MiscDatasetFxTests
(in
mvpa.tests.test_datasetfx
)
mapForward()
(in
MappedDataset
)
MaximalVote
(in
mvpa.clfs.meta
)
miscfx
(in
mvpa.datasets
)
MapOverlap
(in
mvpa.misc.support
)
maxit
(in
_GLMNET
)
miscfx_sp
(in
mvpa.datasets
)
mapped
(in
mvpa.datasets
)
maxiter
(in
SMLR
)
MixedClass
(in
mvpa.tests.test_params
)
MappedClassifier
(in
mvpa.clfs.meta
)
mbasename()
(in
mvpa.base.verbosity
)
MNI2Tal_Lancaster07FSL()
(in
mvpa.atlases.transformation
)
MappedClassifierSensitivityAnalyzer
(in
mvpa.measures.base
)
McFlirtParams
(in
mvpa.misc.fsl.base
)
MNI2Tal_Lancaster07pooled()
(in
mvpa.atlases.transformation
)
MappedDataset
(in
mvpa.datasets.mapped
)
MCNullDist
(in
mvpa.clfs.stats
)
MNI2Tal_MatthewBrett
(in
mvpa.atlases.transformation
)
mapper
(in
MappedClassifier
)
MeanMismatchErrorFx
(in
mvpa.misc.errorfx
)
MNI2Tal_MeyerLindenberg98()
(in
mvpa.atlases.transformation
)
mapper
(in
MappedDataset
)
meanPowerFx()
(in
mvpa.misc.errorfx
)
MNI2Tal_YOHflirt()
(in
mvpa.atlases.transformation
)
Mapper
(in
mvpa.mappers.base
)
MeanPrediction
(in
mvpa.clfs.meta
)
mode
(in
ElementSelector
)
mappers
(in
mvpa
)
measures
(in
mvpa
)
model
(in
SVM
)
mapReverse()
(in
MappedDataset
)
meg
(in
mvpa.misc.io
)
model_selector
(in
mvpa.clfs
)
mapReverse()
(in
MappedDataset
)
MEGTests
(in
mvpa.tests.test_meg
)
model_type
(in
_GLMNET
)
mapReverse()
(in
MetaDataset
)
melodic
(in
mvpa.misc.fsl
)
ModelSelector
(in
mvpa.clfs.model_selector
)
mapSelfReverse()
(in
MappedDataset
)
MelodicResults
(in
mvpa.misc.fsl.melodic
)
mri
(in
mvpa.misc.plot
)
mapSelfReverse()
(in
MappedDataset
)
meta
(in
mvpa.clfs
)
MulticlassClassifier
(in
mvpa.clfs.meta
)
mask
(in
mvpa.mappers
)
meta
(in
mvpa.datasets
)
multipleChunks()
(in
mvpa.misc.data_generators
)
mask
(in
MaskMapper
)
MetaDataset
(in
mvpa.datasets.meta
)
MultiStopCrit
(in
mvpa.featsel.helpers
)
maskclf
(in
FeatureSelectionClassifier
)
MetaDatasetTests
(in
mvpa.tests.test_metadataset
)
mvpa
masked
(in
mvpa.datasets
)
metric
(in
Mapper
)
N
name
(in
Collection
)
NiftiDataset
(in
mvpa.datasets.nifti
)
np
(in
mvpa.datasets.miscfx_sp
)
name()
(in
CollectableAttribute
)
NiftiDatasetTests
(in
mvpa.tests.test_niftidataset
)
nrows
(in
ColumnData
)
names
(in
Collection
)
niftihdr
(in
ERNiftiDataset
)
nsamples
(in
Dataset
)
nanmean()
(in
mvpa.clfs.stats
)
niftihdr
(in
NiftiDataset
)
nsamples
(in
MetaDataset
)
NBackHistoryStopCrit
(in
mvpa.featsel.helpers
)
NLAcholesky
(in
mvpa.clfs.gpr
)
nsamples
(in
SampleAttributes
)
nchannels
(in
EEPBin
)
NLAError
(in
mvpa.clfs.gpr
)
nsamples
(in
EEPBin
)
ncolumns
(in
ColumnData
)
nlambda
(in
_GLMNET
)
NStepsStopCrit
(in
mvpa.featsel.helpers
)
Ndiag
(in
mvpa.clfs.gpr
)
NLAsolve
(in
mvpa.clfs.gpr
)
ntimepoints
(in
EEPBin
)
ndiscarded
(in
ElementSelector
)
Nlevels
(in
PyMVPAAtlas
)
NU_SVC
(in
mvpa.clfs.libsvmc.svmc
)
Ndot
(in
mvpa.clfs.gpr
)
Nlog
(in
mvpa.clfs.gpr
)
NU_SVR
(in
mvpa.clfs.libsvmc.svmc
)
nelements
(in
FixedNElementTailSelector
)
nnlf()
(in
rv_semifrozen
)
null_dist()
(in
TransferError
)
nevs
(in
FslEV3
)
node
(in
LLEMapper
)
null_dist()
(in
DatasetMeasure
)
new_double
(in
mvpa.clfs.libsvmc.svmc
)
noiseperturbation
(in
mvpa.measures
)
null_dist()
(in
DatasetMeasure
)
new_int
(in
mvpa.clfs.libsvmc.svmc
)
NoisePerturbationSensitivity
(in
mvpa.measures.noiseperturbation
)
null_prob
(in
TransferError
)
nfeatures
(in
Dataset
)
noisy_2d_fx()
(in
mvpa.misc.data_generators
)
null_prob
(in
DatasetMeasure
)
nfeatures
(in
MetaDataset
)
nonbogus_pool
(in
mvpa.tests.tests_warehouse
)
null_t
(in
DatasetMeasure
)
nfeatures
(in
Mapper
)
NoneSplitter
(in
mvpa.datasets.splitters
)
NullDist
(in
mvpa.clfs.stats
)
NFoldSplitter
(in
mvpa.datasets.splitters
)
Nonparametric
(in
mvpa.clfs.stats
)
nulldist_number
(in
DistPValue
)
NGroupSplitter
(in
mvpa.datasets.splitters
)
normalFeatureDataset()
(in
mvpa.misc.data_generators
)
nulldist_sweep
(in
mvpa.tests.test_stats
)
nic
(in
MelodicResults
)
normalFeatureDataset__()
(in
mvpa.misc.data_generators
)
num_threads
(in
SVM
)
nifti
(in
mvpa.datasets
)
normalize
(in
GNB
)
O
O
(in
MappedDataset
)
OneMinus()
(in
mvpa.misc.transformers
)
Options
(in
mvpa.misc.cmdline
)
OddEvenSplitter
(in
mvpa.datasets.splitters
)
oneMinusCorrelation()
(in
mvpa.clfs.distance
)
opts
(in
mvpa.misc.cmdline
)
offsetbydepth
(in
DebugLogger
)
OneWayAnova
(in
mvpa.measures.anova
)
origin
(in
XMLBasedAtlas
)
oldname
(in
mvpa.datasets.nifti
)
onsets
(in
FslEV3
)
OverAxis
(in
mvpa.misc.transformers
)
oldname
(in
mvpa.support.griddata
)
opt
(in
mvpa.misc.cmdline
)
owner
(in
Collection
)
OnceLogger
(in
mvpa.base.verbosity
)
optDebug
(in
mvpa.misc.cmdline
)
ONE_CLASS
(in
mvpa.clfs.libsvmc.svmc
)
OptionGroups
(in
mvpa.misc.cmdline
)
P
p()
(in
NullDist
)
plotBars()
(in
mvpa.misc.plot.base
)
predictions
(in
Classifier
)
p1
(in
ParametrizedClassifier
)
plotDatasetChunks()
(in
mvpa.misc.plot.base
)
predictions
(in
ClassifierCombiner
)
p1
(in
TestClassParametrized
)
plotDistributionMatches()
(in
mvpa.clfs.stats
)
predictions
(in
MaximalVote
)
param
(in
mvpa.misc
)
plotERP()
(in
mvpa.misc.plot.erp
)
predictions
(in
MeanPrediction
)
param()
(in
SVMParameter
)
plotERPs()
(in
mvpa.misc.plot.erp
)
PredictionsCombiner
(in
mvpa.clfs.meta
)
Parameter
(in
mvpa.misc.param
)
plotErrLine()
(in
mvpa.misc.plot.base
)
predictProbability()
(in
SVMModel
)
ParameterCollection
(in
mvpa.misc.state
)
plotFeatureHist()
(in
mvpa.misc.plot.base
)
predictValues()
(in
SVMModel
)
ParametrizedClassifier
(in
mvpa.tests.test_params
)
plotHeadOutline()
(in
mvpa.misc.plot.topo
)
predictValuesRaw()
(in
SVMModel
)
ParametrizedClassifierExtended
(in
mvpa.tests.test_params
)
plotHeadTopography()
(in
mvpa.misc.plot.topo
)
print_registered()
(in
SetLogger
)
ParamsTests
(in
mvpa.tests.test_params
)
plotMRI()
(in
mvpa.misc.plot.mri
)
printsetid
(in
SetLogger
)
parse()
(in
SmartVersion
)
plotSamplesDistance()
(in
mvpa.misc.plot.base
)
prior
(in
GNB
)
parser
(in
mvpa.misc.cmdline
)
plr
(in
mvpa.clfs
)
probabilities
(in
SVM
)
parseStatus()
(in
mvpa.base.verbosity
)
PLR
(in
mvpa.clfs.plr
)
process_args()
(in
mvpa.clfs.libsmlrc.ctypes_helper
)
path
(in
MelodicResults
)
PLRTests
(in
mvpa.tests.test_plr
)
procrustean
(in
mvpa.mappers
)
pca
(in
mvpa.mappers
)
pls
(in
mvpa.measures
)
ProcrusteanMapper
(in
mvpa.mappers.procrustean
)
PCAMapper
(in
mvpa.mappers.pca
)
PLS
(in
mvpa.measures.pls
)
ProcrusteanMapperTests
(in
mvpa.tests.test_procrust
)
PCAMapperTests
(in
mvpa.tests.test_pcamapper
)
pmax
(in
_GLMNET
)
prof
(in
mvpa.tests.runner
)
pe
(in
GLM
)
pname
(in
mvpa.tests.runner
)
profilelevel
(in
mvpa.tests.runner
)
percentCorrect()
(in
ConfusionMatrix
)
pnorm_w_python()
(in
mvpa.clfs.distance
)
profilelines
(in
mvpa.tests.runner
)
permuteLabels()
(in
Dataset
)
POLY
(in
mvpa.clfs.libsvmc.svmc
)
proj
(in
ProjectionMapper
)
permuteLabels()
(in
MetaDataset
)
positives_recovered
(in
DistPValue
)
ProjectionMapper
(in
mvpa.mappers.base
)
PerturbationSensitivityAnalyzerTests
(in
mvpa.tests.test_perturbsensana
)
ppf7()
(in
mvpa.support.stats
)
property
plot
(in
mvpa.misc
)
PRECOMPUTED
(in
mvpa.clfs.libsvmc.svmc
)
props
(in
DataReader
)
plot()
(in
ConfusionMatrix
)
predict()
(in
Classifier
)
ProxyClassifier
(in
mvpa.clfs.meta
)
plot()
(in
ROCCurve
)
predict()
(in
Classifier
)
ProxyClassifierSensitivityAnalyzer
(in
mvpa.measures.base
)
plot()
(in
RegressionStatistics
)
predict()
(in
SVMModel
)
pureMultivariateSignal()
(in
mvpa.misc.data_generators
)
plot()
(in
SequenceStats
)
predicted_variances
(in
BLR
)
pymvpa_dataroot
(in
mvpa
)
plot()
(in
FslGLMDesign
)
predicted_variances
(in
GPR
)
PyMVPAAtlas
(in
mvpa.atlases.base
)
plot()
(in
McFlirtParams
)
predicting_time
(in
Classifier
)
PyStringMap
(in
mvpa.support._copy
)
R
r
(in
mvpa.tests.tests_warehouse_clfs
)
report
(in
mvpa.base
)
reverse()
(in
ProjectionMapper
)
RangeElementSelector
(in
mvpa.featsel.helpers
)
Report
(in
mvpa.base.report
)
reverse()
(in
ProjectionMapper
)
RankOrder()
(in
mvpa.misc.transformers
)
Report
(in
mvpa.base.report_dummy
)
reverse()
(in
BoxcarMapper
)
raw_predictions
(in
BoostedClassifier
)
report_dummy
(in
mvpa.base
)
reverse()
(in
LLEMapper
)
raw_results
(in
DatasetMeasure
)
ReportTest
(in
mvpa.tests.test_report
)
reverse()
(in
MaskMapper
)
raw_values
(in
BoostedClassifier
)
repredict()
(in
Classifier
)
reverse()
(in
MaskMapper
)
RBF
(in
mvpa.clfs.libsvmc.svmc
)
repredict()
(in
Classifier
)
reverse()
(in
SampleGroupMapper
)
RbfCSVMC
(in
mvpa.clfs.svm
)
resamp_decay
(in
SMLR
)
reverse()
(in
SimpleSOMMapper
)
RbfNuSVMC
(in
mvpa.clfs.svm
)
resample()
(in
ChannelDataset
)
reverse()
(in
_WaveletMapper
)
rdist
(in
mvpa.support.stats
)
resample()
(in
ChannelDataset
)
ReverseRankOrder()
(in
mvpa.misc.transformers
)
rdist_gen
(in
mvpa.support.stats
)
reset()
(in
Kernel
)
rfe
(in
mvpa.featsel
)
read_fsl_design()
(in
mvpa.misc.fsl.base
)
reset()
(in
KernelLinear
)
RFE
(in
mvpa.featsel.rfe
)
rebuildSamples()
(in
MetaDataset
)
reset()
(in
KernelSquaredExponential
)
RFEHistory2maps()
(in
mvpa.misc.support
)
recon
(in
ProjectionMapper
)
reset()
(in
SummaryStatistics
)
rfesvm
(in
mvpa.clfs.warehouse
)
ReferencesAtlas
(in
mvpa.atlases.base
)
reset()
(in
AttributeWithUnique
)
rfesvm_split
(in
mvpa.clfs.warehouse
)
ReferencesLevel
(in
mvpa.atlases.base
)
reset()
(in
CollectableAttribute
)
RFETests
(in
mvpa.tests.test_rfe
)
register()
(in
SetLogger
)
reset()
(in
StateVariable
)
ridge
(in
mvpa.clfs
)
registered
(in
SetLogger
)
reset()
(in
ClassWithCollections
)
RidgeReg
(in
mvpa.clfs.ridge
)
registered()
(in
Hamster
)
reset()
(in
ClassWithCollections
)
RidgeRegTests
(in
mvpa.tests.test_ridge
)
registerMetric()
(in
DebugLogger
)
reset()
(in
Collection
)
RMSErrorFx
(in
mvpa.misc.errorfx
)
regression
(in
Classifier
)
resetvalue()
(in
Parameter
)
ROCCurve
(in
mvpa.clfs.transerror
)
RegressionStatistics
(in
mvpa.clfs.transerror
)
resetvalue()
(in
ParameterCollection
)
ROCs()
(in
ROCCurve
)
RegressionsTests
(in
mvpa.tests.test_regr
)
results
(in
CrossValidatedTransferError
)
rootMeanPowerFx()
(in
mvpa.misc.errorfx
)
regrswh
(in
mvpa.clfs.warehouse
)
retrain()
(in
Classifier
)
rstUnderline()
(in
mvpa.base.dochelpers
)
RelativeRMSErrorFx
(in
mvpa.misc.errorfx
)
retrain()
(in
Classifier
)
run()
(in
mvpa.tests
)
RelativeTime
(in
mvpa.base.verbosity
)
retrainable
(in
Classifier
)
runner
(in
mvpa.tests
)
reload()
(in
ConfigManager
)
reuseAbsolutePath()
(in
mvpa.misc.support
)
runTests()
(in
TestProgramPyMVPA
)
relvar_per_ic
(in
MelodicResults
)
reverse()
(in
ChainMapper
)
rv_semifrozen
(in
mvpa.clfs.stats
)
remove()
(in
Collection
)
reverse()
(in
CombinedMapper
)
removeInvariantFeatures()
(in
mvpa.datasets.miscfx
)
reverse()
(in
Mapper
)
S
sa
(in
_Dataset
)
setUp()
(in
VerboseOutputTest
)
suite()
(in
mvpa.tests.test_hyperalignment
)
SameSignClassifier
(in
mvpa.tests.tests_warehouse_clfs
)
setUp()
(in
ZScoreMapperTests
)
suite()
(in
mvpa.tests.test_icamapper
)
sample_clf_lin
(in
mvpa.tests.tests_warehouse_clfs
)
sg
(in
mvpa.clfs
)
suite()
(in
mvpa.tests.test_ifs
)
sample_clf_nl
(in
mvpa.tests.tests_warehouse_clfs
)
sigma_noise
(in
GPR
)
suite()
(in
mvpa.tests.test_iohelpers
)
SampleAttribute
(in
mvpa.misc.attributes
)
Sigma_p
(in
KernelLinear
)
suite()
(in
mvpa.tests.test_kernel
)
SampleAttributes
(in
mvpa.misc.io.base
)
SIGMOID
(in
mvpa.clfs.libsvmc.svmc
)
suite()
(in
mvpa.tests.test_knn
)
SampleAttributesCollection
(in
mvpa.misc.state
)
SillySensitivityAnalyzer
(in
mvpa.tests.test_rfe
)
suite()
(in
mvpa.tests.test_lars
)
samplegroup
(in
mvpa.mappers
)
SimpleClass
(in
mvpa.tests.test_params
)
suite()
(in
mvpa.tests.test_maskeddataset
)
SampleGroupMapper
(in
mvpa.mappers.samplegroup
)
SimpleSOMMapper
(in
mvpa.mappers.som
)
suite()
(in
mvpa.tests.test_meg
)
SampleGroupMapperTests
(in
mvpa.tests.test_samplegroupmapper
)
singleGammaHRF()
(in
mvpa.misc.fx
)
suite()
(in
mvpa.tests.test_metadataset
)
samples
(in
_Dataset
)
singleOrPlural()
(in
mvpa.base.dochelpers
)
suite()
(in
mvpa.tests.test_neighbor
)
samples_error
(in
CrossValidatedTransferError
)
sinModulated()
(in
mvpa.misc.data_generators
)
suite()
(in
mvpa.tests.test_niftidataset
)
samples_error
(in
TransferError
)
SLAError
(in
mvpa.clfs.gpr
)
suite()
(in
mvpa.tests.test_params
)
samples_original
(in
MappedDataset
)
SmartVersion
(in
mvpa.misc.support
)
suite()
(in
mvpa.tests.test_pcamapper
)
samplingrate
(in
ChannelDataset
)
smlr
(in
mvpa.clfs
)
suite()
(in
mvpa.tests.test_perturbsensana
)
samplingrate
(in
NiftiDataset
)
SMLR
(in
mvpa.clfs.smlr
)
suite()
(in
mvpa.tests.test_plr
)
save()
(in
ConfigManager
)
smlrlib
(in
mvpa.clfs.libsmlrc
)
suite()
(in
mvpa.tests.test_procrust
)
save()
(in
Report
)
SMLRTests
(in
mvpa.tests.test_smlr
)
suite()
(in
mvpa.tests.test_regr
)
save()
(in
SVMModel
)
SMLRWeights
(in
mvpa.clfs.smlr
)
suite()
(in
mvpa.tests.test_report
)
searchlight
(in
mvpa.measures
)
smodes
(in
MelodicResults
)
suite()
(in
mvpa.tests.test_rfe
)
Searchlight
(in
mvpa.measures.searchlight
)
snr_scale
(in
mvpa.tests.tests_warehouse
)
suite()
(in
mvpa.tests.test_ridge
)
SearchlightTests
(in
mvpa.tests.test_searchlight
)
solve()
(in
ModelSelector
)
suite()
(in
mvpa.tests.test_samplegroupmapper
)
SecondAxisMaxOfAbs()
(in
mvpa.misc.transformers
)
som
(in
mvpa.mappers
)
suite()
(in
mvpa.tests.test_searchlight
)
SecondAxisMean()
(in
mvpa.misc.transformers
)
SOMMapperTests
(in
mvpa.tests.test_som
)
suite()
(in
mvpa.tests.test_smlr
)
SecondAxisSumOfAbs()
(in
mvpa.misc.transformers
)
source
(in
PyMVPAAtlas
)
suite()
(in
mvpa.tests.test_som
)
seed
(in
SMLR
)
source
(in
FSLAtlas
)
suite()
(in
mvpa.tests.test_splitsensana
)
seed()
(in
mvpa
)
space
(in
PyMVPAAtlas
)
suite()
(in
mvpa.tests.test_splitter
)
select()
(in
Dataset
)
spaceFlavor
(in
PyMVPAAtlas
)
suite()
(in
mvpa.tests.test_state
)
selected_ids
(in
FeatureSelection
)
spaceT
(in
XMLBasedAtlas
)
suite()
(in
mvpa.tests.test_stats
)
selectFeatures()
(in
Dataset
)
SpaceTransformation
(in
mvpa.atlases.transformation
)
suite()
(in
mvpa.tests.test_stats_sp
)
selectFeatures()
(in
MappedDataset
)
specs
(in
mvpa.tests.tests_warehouse
)
suite()
(in
mvpa.tests.test_suite
)
selectFeatures()
(in
MappedDataset
)
spheresizes
(in
Searchlight
)
suite()
(in
mvpa.tests.test_support
)
selectFeatures()
(in
MetaDataset
)
split_kwargs()
(in
mvpa.misc.args
)
suite()
(in
mvpa.tests.test_svdmapper
)
selectFeaturesByMask()
(in
MaskedDataset
)
split_weights
(in
LinearSVMWeights
)
suite()
(in
mvpa.tests.test_svm
)
selections_ids
(in
CombinedFeatureSelection
)
splitcfg()
(in
Splitter
)
suite()
(in
mvpa.tests.test_transerror
)
selectOut()
(in
ChainMapper
)
SplitClassifier
(in
mvpa.clfs.meta
)
suite()
(in
mvpa.tests.test_transformers
)
selectOut()
(in
CombinedMapper
)
splitDataset()
(in
Splitter
)
suite()
(in
mvpa.tests.test_verbosity
)
selectOut()
(in
Mapper
)
SplitFeaturewiseDatasetMeasure
(in
mvpa.measures.base
)
suite()
(in
mvpa.tests.test_waveletmapper
)
selectOut()
(in
Mapper
)
SplitFeaturewiseMeasure
(in
mvpa.measures.splitmeasure
)
suite()
(in
mvpa.tests.test_zscoremapper
)
selectOut()
(in
ProjectionMapper
)
splitmeasure
(in
mvpa.measures
)
SuiteTest
(in
mvpa.tests.test_suite
)
selectOut()
(in
ProjectionMapper
)
splits
(in
CrossValidatedTransferError
)
summaries()
(in
SummaryStatistics
)
selectOut()
(in
BoxcarMapper
)
splits
(in
SplitClassifier
)
summary()
(in
Classifier
)
selectOut()
(in
MaskMapper
)
splits
(in
SplitFeaturewiseDatasetMeasure
)
summary()
(in
Classifier
)
selectOut()
(in
MaskMapper
)
SplitSensitivityAnalyserTests
(in
mvpa.tests.test_splitsensana
)
summary()
(in
SVM
)
selectOut()
(in
SampleGroupMapper
)
splitter
(in
CrossValidatedTransferError
)
summary()
(in
CombinedClassifier
)
selectOut()
(in
SimpleSOMMapper
)
splitter
(in
SplitClassifier
)
summary()
(in
ProxyClassifier
)
selectOut()
(in
SVDMapper
)
Splitter
(in
mvpa.datasets.splitters
)
summary()
(in
TreeClassifier
)
selectOut()
(in
_WaveletMapper
)
splitters
(in
mvpa.datasets
)
summary()
(in
Dataset
)
selectSamples()
(in
Dataset
)
SplitterTests
(in
mvpa.tests.test_splitter
)
summary_labels()
(in
Dataset
)
selectSamples()
(in
MetaDataset
)
squared_euclidean_distance()
(in
mvpa.clfs.distance
)
SummaryStatistics
(in
mvpa.clfs.transerror
)
selectSamples()
(in
ColumnData
)
standardize
(in
_GLMNET
)
support
(in
mvpa.misc
)
sens
(in
mvpa.clfs.libsvmc
)
state
(in
mvpa.misc
)
support
(in
mvpa
)
sens
(in
mvpa.clfs.sg
)
state0
(in
TestClassParametrized
)
SupportFxTests
(in
mvpa.tests.test_support
)
sensitivities
(in
RFE
)
state1
(in
MixedClass
)
sv
(in
SVDMapper
)
sensitivities
(in
CombinedFeaturewiseDatasetMeasure
)
state1
(in
TestClassProper
)
svd
(in
mvpa.mappers
)
sensitivities
(in
SplitFeaturewiseDatasetMeasure
)
state2
(in
TestClassProper
)
SVDMapper
(in
mvpa.mappers.svd
)
sensitivity
(in
SensitivityBasedFeatureSelection
)
state4
(in
TestClassProperChild
)
SVDMapperTests
(in
mvpa.tests.test_svdmapper
)
Sensitivity
(in
mvpa.measures.base
)
StateCollection
(in
mvpa.misc.state
)
svm
(in
mvpa.clfs.libsvmc
)
sensitivity_analyzer
(in
SensitivityBasedFeatureSelection
)
StateTests
(in
mvpa.tests.test_state
)
SVM
(in
mvpa.clfs.libsvmc.svm
)
SensitivityAnalysersTests
(in
mvpa.tests.test_datameasure
)
StateVariable
(in
mvpa.misc.attributes
)
svm
(in
mvpa.clfs.sg
)
SensitivityBasedFeatureSelection
(in
mvpa.featsel.base
)
StaticDatasetMeasure
(in
mvpa.measures.base
)
SVM
(in
mvpa.clfs.sg.svm
)
SensorLocations
(in
mvpa.misc.io.base
)
stats
(in
mvpa.clfs
)
svm
(in
SVM
)
SequenceStats
(in
mvpa.datasets.miscfx
)
stats
(in
mvpa.misc
)
svm
(in
mvpa.clfs
)
set_hyperparameters()
(in
BLR
)
stats
(in
mvpa.support
)
SVM
(in
mvpa.clfs.svm
)
set_hyperparameters()
(in
GPR
)
stats
(in
mvpa.tests.runner
)
svm_check_parameter
(in
mvpa.clfs.libsvmc.svmc
)
set_hyperparameters()
(in
KernelConstant
)
stats()
(in
SummaryStatistics
)
svm_check_probability_model
(in
mvpa.clfs.libsvmc.svmc
)
set_hyperparameters()
(in
KernelExponential
)
StatsTests
(in
mvpa.tests.test_stats
)
svm_cross_validation
(in
mvpa.clfs.libsvmc.svmc
)
set_hyperparameters()
(in
KernelLinear
)
StatsTestsScipy
(in
mvpa.tests.test_stats_sp
)
svm_get_labels
(in
mvpa.clfs.libsvmc.svmc
)
set_hyperparameters()
(in
KernelMatern_3_2
)
std_to_keep
(in
SMLR
)
svm_get_nr_class
(in
mvpa.clfs.libsvmc.svmc
)
set_hyperparameters()
(in
KernelRationalQuadratic
)
steps
(in
NBackHistoryStopCrit
)
svm_get_svm_type
(in
mvpa.clfs.libsvmc.svmc
)
set_hyperparameters()
(in
KernelSquaredExponential
)
steps
(in
NStepsStopCrit
)
svm_get_svr_probability
(in
mvpa.clfs.libsvmc.svmc
)
setActiveFromString()
(in
SetLogger
)
stepwise_regression()
(in
mvpa.clfs.libsmlrc
)
svm_load_model
(in
mvpa.clfs.libsvmc.svmc
)
setCoordT()
(in
XMLBasedAtlas
)
StoppingCriterion
(in
mvpa.featsel.helpers
)
svm_model
(in
mvpa.clfs.libsvmc.svmc
)
setCoordT()
(in
XMLBasedAtlas
)
strategy
(in
Splitter
)
svm_model_swigregister
(in
mvpa.clfs.libsvmc.svmc
)
setDefault()
(in
Parameter
)
substractBaseline()
(in
ChannelDataset
)
svm_node_array
(in
mvpa.clfs.libsvmc.svmc
)
setDistance()
(in
ReferencesAtlas
)
substractBaseline()
(in
ChannelDataset
)
svm_node_array_destroy
(in
mvpa.clfs.libsvmc.svmc
)
setLabels_map()
(in
ConfusionMatrix
)
suite
(in
mvpa
)
svm_node_array_set
(in
mvpa.clfs.libsvmc.svmc
)
setLabelsMap()
(in
Dataset
)
suite()
(in
mvpa.tests.test_args
)
svm_node_matrix
(in
mvpa.clfs.libsvmc.svmc
)
SetLogger
(in
mvpa.base.verbosity
)
suite()
(in
mvpa.tests.test_arraymapper
)
svm_node_matrix2numpy_array
(in
mvpa.clfs.libsvmc.svmc
)
setMetric()
(in
Mapper
)
suite()
(in
mvpa.tests.test_atlases
)
svm_node_matrix_destroy
(in
mvpa.clfs.libsvmc.svmc
)
setMetric()
(in
Mapper
)
suite()
(in
mvpa.tests.test_base
)
svm_node_matrix_set
(in
mvpa.clfs.libsvmc.svmc
)
setNPerLabel()
(in
Splitter
)
suite()
(in
mvpa.tests.test_boxcarmapper
)
svm_parameter
(in
mvpa.clfs.libsvmc.svmc
)
setReferenceLevel()
(in
ReferencesAtlas
)
suite()
(in
mvpa.tests.test_clf
)
svm_parameter_swigregister
(in
mvpa.clfs.libsvmc.svmc
)
sets
(in
SummaryStatistics
)
suite()
(in
mvpa.tests.test_clfcrossval
)
svm_predict
(in
mvpa.clfs.libsvmc.svmc
)
setSamplesDType()
(in
Dataset
)
suite()
(in
mvpa.tests.test_cmdline
)
svm_predict_probability
(in
mvpa.clfs.libsvmc.svmc
)
setSamplesDType()
(in
MetaDataset
)
suite()
(in
mvpa.tests.test_config
)
svm_predict_values
(in
mvpa.clfs.libsvmc.svmc
)
setTestDataset()
(in
FeatureSelectionClassifier
)
suite()
(in
mvpa.tests.test_datameasure
)
svm_problem
(in
mvpa.clfs.libsvmc.svmc
)
setUp()
(in
ClassifiersTests
)
suite()
(in
mvpa.tests.test_dataset
)
svm_problem_swigregister
(in
mvpa.clfs.libsvmc.svmc
)
setUp()
(in
SensitivityAnalysersTests
)
suite()
(in
mvpa.tests.test_datasetfx
)
svm_save_model
(in
mvpa.clfs.libsvmc.svmc
)
setUp()
(in
TestExternals
)
suite()
(in
mvpa.tests.test_datasetfx_sp
)
svm_set_verbosity
(in
mvpa.clfs.libsvmc.svmc
)
setUp()
(in
ICAMapperTests
)
suite()
(in
mvpa.tests.test_dochelpers
)
svm_train
(in
mvpa.clfs.libsvmc.svmc
)
setUp()
(in
PCAMapperTests
)
suite()
(in
mvpa.tests.test_eepdataset
)
svmc
(in
mvpa.clfs.libsvmc
)
setUp()
(in
PerturbationSensitivityAnalyzerTests
)
suite()
(in
mvpa.tests.test_enet
)
SVMModel
(in
mvpa.clfs.libsvmc._svm
)
setUp()
(in
SearchlightTests
)
suite()
(in
mvpa.tests.test_externals
)
SVMParameter
(in
mvpa.clfs.libsvmc._svm
)
setUp()
(in
SplitterTests
)
suite()
(in
mvpa.tests.test_gnb
)
SVMProblem
(in
mvpa.clfs.libsvmc._svm
)
setUp()
(in
SVDMapperTests
)
suite()
(in
mvpa.tests.test_gpr
)
SVMTests
(in
mvpa.tests.test_svm
)
setUp()
(in
TransformerTests
)
suite()
(in
mvpa.tests.test_hamster
)
sweepargs()
(in
mvpa.tests.tests_warehouse
)
T
t0
(in
ChannelDataset
)
testConfusionMatrixACC()
(in
ErrorsTests
)
testPatternSelection()
(in
MaskedDatasetTests
)
t0
(in
EEPBin
)
testConfusionMatrixWithMappings()
(in
ErrorsTests
)
testPatternShape()
(in
MaskedDatasetTests
)
table2string()
(in
mvpa.base.dochelpers
)
testConfusionPlot()
(in
ErrorsTests
)
testPerSampleError()
(in
ErrorsTests
)
tail
(in
NullDist
)
testConfusionPlot2()
(in
ErrorsTests
)
testPerturbationSensitivityAnalyzer()
(in
PerturbationSensitivityAnalyzerTests
)
TailSelector
(in
mvpa.featsel.helpers
)
testCoord2Feature()
(in
MaskedDatasetTests
)
testPLR()
(in
PLRTests
)
Tal2MNI_Lancaster07FSL()
(in
mvpa.atlases.transformation
)
testCopy()
(in
DatasetTests
)
testPLRState()
(in
PLRTests
)
Tal2MNI_Lancaster07pooled()
(in
mvpa.atlases.transformation
)
testCorrectDimensionsOrder()
(in
ClassifiersTests
)
testPNorm_w()
(in
KernelTests
)
Tal2MNI_YOHflirt()
(in
mvpa.atlases.transformation
)
testCorrelation()
(in
SupportFxTests
)
testPossibleInputs()
(in
HyperAlignmentTests
)
TaskPLS
(in
mvpa.measures.pls
)
testCountedSplitting()
(in
SplitterTests
)
TestProgramPyMVPA
(in
mvpa.tests.runner
)
tearDown()
(in
TestExternals
)
testCperClass()
(in
SVMTests
)
testProperState()
(in
StateTests
)
tearDown()
(in
VerboseOutputTest
)
testCR()
(in
VerboseOutputTest
)
testProperStateChild()
(in
StateTests
)
test_args
(in
mvpa.tests
)
testCreateMaskedDataset()
(in
MaskedDatasetTests
)
testRankOrder()
(in
TransformerTests
)
test_arraymapper
(in
mvpa.tests
)
testCustomSplit()
(in
SplitterTests
)
testRDistStability()
(in
StatsTestsScipy
)
test_atlases
(in
mvpa.tests
)
testdataset
(in
FeatureSelectionClassifier
)
testRegressions()
(in
RegressionsTests
)
test_base
(in
mvpa.tests
)
testDatasetMeasureProb()
(in
StatsTestsScipy
)
testRegressionsClassifiers()
(in
RegressionsTests
)
test_basic()
(in
GPRTests
)
testDebug()
(in
VerboseOutputTest
)
testRequiredAtrributes()
(in
DatasetTests
)
test_boxcarmapper
(in
mvpa.tests
)
testDebugRgexp()
(in
VerboseOutputTest
)
testResampling()
(in
EEPDatasetTests
)
test_clf
(in
mvpa.tests
)
testDecorator()
(in
ArgsHelpersTest
)
testRetrainables()
(in
ClassifiersTests
)
test_clfcrossval
(in
mvpa.tests
)
testDegenerateConfusion()
(in
ErrorsTests
)
testReverseDenseArrayMapper()
(in
DenseArrayMapperTests
)
test_cmdline
(in
mvpa.tests
)
testDegenerateUsage()
(in
ClassifiersTests
)
testRFE()
(in
RFETests
)
test_config
(in
mvpa.tests
)
testDenseArrayMapperMetrics()
(in
DenseArrayMapperTests
)
testRidgeReg()
(in
RidgeRegTests
)
test_datameasure
(in
mvpa.tests
)
testDescreteMetric()
(in
MetricTests
)
testRidgeRegState()
(in
RidgeRegTests
)
test_dataset
(in
mvpa.tests
)
testDescreteMetricCompatMask()
(in
MetricTests
)
tests
(in
mvpa
)
test_datasetfx
(in
mvpa.tests
)
testdesign2labels()
(in
IOHelperTests
)
tests_warehouse
(in
mvpa.tests
)
test_datasetfx_sp
(in
mvpa.tests
)
testDetrend()
(in
MiscDatasetFxSpTests
)
tests_warehouse_clfs
(in
mvpa.tests
)
test_datasetng
(in
mvpa.tests
)
testDiscardedBoundaries()
(in
SplitterTests
)
testSamplesAttributes()
(in
IOHelperTests
)
test_dochelpers
(in
mvpa.tests
)
testDistances()
(in
MetricTests
)
testSampleSelection()
(in
DatasetTests
)
test_eepdataset
(in
mvpa.tests
)
testDistPValue()
(in
TransformerTests
)
testSearchlight()
(in
SearchlightTests
)
test_enet
(in
mvpa.tests
)
testDummy()
(in
ClassifiersTests
)
testSelects()
(in
DenseArrayMapperTests
)
test_externals
(in
mvpa.tests
)
testEEPBin()
(in
EEPDatasetTests
)
testSensitivities()
(in
RegressionsTests
)
test_gnb
(in
mvpa.tests
)
testENET()
(in
ENETTests
)
testSensitivityBasedFeatureSelection()
(in
RFETests
)
test_gpr
(in
mvpa.tests
)
testENETSensitivities()
(in
ENETTests
)
testSensorLocations()
(in
IOHelperTests
)
test_gpr_model_selection()
(in
GPRTests
)
testENETState()
(in
ENETTests
)
testSequenceStat()
(in
MiscDatasetFxTests
)
test_hamster
(in
mvpa.tests
)
testERNiftiDataset()
(in
NiftiDatasetTests
)
testShapeConversion()
(in
MaskedDatasetTests
)
test_hyperalignment
(in
mvpa.tests
)
testERNiftiDatasetMapping()
(in
NiftiDatasetTests
)
testSillyness()
(in
SVMTests
)
test_icamapper
(in
mvpa.tests
)
testError()
(in
VerboseOutputTest
)
testSimple()
(in
BoxcarMapperTests
)
test_ifs
(in
mvpa.tests
)
testEuclidDist()
(in
KernelTests
)
testSimple()
(in
MetaDatasetTests
)
test_initSimple()
(in
mvpa.tests.test_datasetng
)
testEvent()
(in
SupportFxTests
)
testSimple()
(in
ParamsTests
)
test_iohelpers
(in
mvpa.tests
)
testEventDataset()
(in
MetaDatasetTests
)
testSimple()
(in
ProcrusteanMapperTests
)
test_kernel
(in
mvpa.tests
)
testEventDatasetExtended()
(in
MetaDatasetTests
)
testSimple()
(in
SampleGroupMapperTests
)
test_knn
(in
mvpa.tests
)
testEvilSelects()
(in
DatasetTests
)
testSimpleICA()
(in
ICAMapperTests
)
test_lars
(in
mvpa.tests
)
TestExternals
(in
mvpa.tests.test_externals
)
testSimpleNMinusOneCV()
(in
CrossValidationTests
)
test_linear()
(in
GPRTests
)
testExternals()
(in
TestExternals
)
testSimplePCA()
(in
PCAMapperTests
)
test_maskeddataset
(in
mvpa.tests
)
testExternalsCorrect2ndInvocation()
(in
TestExternals
)
testSimpleSOM()
(in
SOMMapperTests
)
test_meg
(in
mvpa.tests
)
testExternalsNoDoubleInvocation()
(in
TestExternals
)
testSimplestCVPatGen()
(in
SplitterTests
)
test_metadataset
(in
mvpa.tests
)
testFeature2Coord()
(in
MaskedDatasetTests
)
testSimpleStorage()
(in
HamsterHelperTests
)
test_neighbor
(in
mvpa.tests
)
testFeatureMaskConversion()
(in
DatasetTests
)
testSimpleSVD()
(in
SVDMapperTests
)
test_niftidataset
(in
mvpa.tests
)
testFeatureMasking()
(in
MaskedDatasetTests
)
testSimpleWDM()
(in
WaveletMappersTests
)
test_params
(in
mvpa.tests
)
testFeatureSelection()
(in
DatasetTests
)
testSimpleWP1Level()
(in
WaveletMappersTests
)
test_pcamapper
(in
mvpa.tests
)
testFeatureSelection()
(in
MaskedDatasetTests
)
testSmartVersion()
(in
SupportFxTests
)
test_perturbsensana
(in
mvpa.tests
)
testFeatureSelectionClassifier()
(in
ClassifiersTests
)
testSMLR()
(in
SMLRTests
)
test_plr
(in
mvpa.tests
)
testFeatureSelectionClassifierWithRegression()
(in
ClassifiersTests
)
testSMLRSensitivities()
(in
SMLRTests
)
test_pls
(in
mvpa.tests
)
testFeatureSelectionPipeline()
(in
RFETests
)
testSMLRState()
(in
SMLRTests
)
test_procrust
(in
mvpa.tests
)
testFeatureSelector()
(in
RFETests
)
testSpecification()
(in
HamsterHelperTests
)
test_read_fsl_design()
(in
IOHelperTests
)
testFind()
(in
AtlasesTests
)
testSplitClassifier()
(in
ClassifiersTests
)
test_regr
(in
mvpa.tests
)
testFirstAxisSumNotZero()
(in
TransformerTests
)
testSplitClassifierExtended()
(in
ClassifiersTests
)
test_report
(in
mvpa.tests
)
testFixedErrorThresholdStopCrit()
(in
RFETests
)
testSplitFeaturewiseDatasetMeasure()
(in
SensitivityAnalysersTests
)
test_rfe
(in
mvpa.tests
)
testForwardDenseArrayMapper()
(in
DenseArrayMapperTests
)
testStateVariables()
(in
StateTests
)
test_ridge
(in
mvpa.tests
)
testFslEV()
(in
IOHelperTests
)
testStoredTemporarily()
(in
StateTests
)
test_samplegroupmapper
(in
mvpa.tests
)
testFslEV2()
(in
IOHelperTests
)
testSummary()
(in
ClassifiersTests
)
test_searchlight
(in
mvpa.tests
)
testFslGLMDesign()
(in
IOHelperTests
)
testSummary()
(in
DatasetTests
)
test_single_class()
(in
ClassifiersTests
)
testGenericTests()
(in
ClassifiersTests
)
testSVMs()
(in
ClassifiersTests
)
test_smlr
(in
mvpa.tests
)
testGetInOutIdBehaviour()
(in
DenseArrayMapperTests
)
testTransformations()
(in
AtlasesTests
)
test_som
(in
mvpa.tests
)
testGetNeighbors()
(in
MetricTests
)
testTransformWithBoxcar()
(in
SupportFxTests
)
test_splitsensana
(in
mvpa.tests
)
testGetSaveEnabled()
(in
StateTests
)
testTreeClassifier()
(in
ClassifiersTests
)
test_splitter
(in
mvpa.tests
)
testGLM()
(in
StatsTestsScipy
)
testTScoredAnalyzer()
(in
SplitSensitivityAnalyserTests
)
test_state
(in
mvpa.tests
)
testGNB()
(in
GNBTests
)
testTuebingenMEG()
(in
MEGTests
)
test_stats
(in
mvpa.tests
)
testHalfSplit()
(in
SplitterTests
)
testUnionFeatureSelection()
(in
SensitivityAnalysersTests
)
test_stats_sp
(in
mvpa.tests
)
testHarvester()
(in
SupportFxTests
)
testValues()
(in
ClassifiersTests
)
test_suite
(in
mvpa.tests
)
testHarvesting()
(in
ClassifiersTests
)
testVerboseAbove()
(in
VerboseOutputTest
)
test_support
(in
mvpa.tests
)
testHarvesting()
(in
CrossValidationTests
)
testVerboseBelow()
(in
VerboseOutputTest
)
test_svdmapper
(in
mvpa.tests
)
testId()
(in
DatasetTests
)
testVerboseIndent()
(in
VerboseOutputTest
)
test_svm
(in
mvpa.tests
)
testIdHash()
(in
SupportFxTests
)
testVerboseNegative()
(in
VerboseOutputTest
)
test_transerror
(in
mvpa.tests
)
testIds()
(in
BoxcarMapperTests
)
testWtf()
(in
TestBases
)
test_transformers
(in
mvpa.tests
)
testIdsonboundaries()
(in
DatasetTests
)
testZScoring()
(in
DatasetTests
)
test_verbosity
(in
mvpa.tests
)
testIFS()
(in
IFSTests
)
text()
(in
Label
)
test_version_to_tuple()
(in
SupportFxTests
)
testInvarFeaturesRemoval()
(in
MiscDatasetFxTests
)
text()
(in
Report
)
test_waveletmapper
(in
mvpa.tests
)
testJamesProblem()
(in
RFETests
)
thresh
(in
_GLMNET
)
test_zscore_reportedfailure()
(in
DatasetTests
)
testKNNState()
(in
KNNTests
)
threshold
(in
FixedErrorThresholdStopCrit
)
test_zscoremapper
(in
mvpa.tests
)
testL1Norm()
(in
TransformerTests
)
tmodes
(in
MelodicResults
)
testAbsolute()
(in
TransformerTests
)
testL2Norm()
(in
TransformerTests
)
toarray()
(in
BrainVoyagerRTC
)
testAbsolute2()
(in
TransformerTests
)
testLabelRandomizationAndSampling()
(in
DatasetTests
)
toarray()
(in
McFlirtParams
)
testAddPatterns()
(in
DatasetTests
)
testLabelRandomizationAndSampling()
(in
MaskedDatasetTests
)
toEvents()
(in
FslEV3
)
testAggregation()
(in
DatasetTests
)
testlabels2chunks()
(in
IOHelperTests
)
toEvents()
(in
SampleAttributes
)
testAllDependencies()
(in
mvpa.base.externals
)
testLabelsMapping()
(in
DatasetTests
)
tofile()
(in
FslEV3
)
testAnalyzer()
(in
SplitSensitivityAnalyserTests
)
testLabelsMappingAddDataset()
(in
DatasetTests
)
tofile()
(in
McFlirtParams
)
testAnalyzerWithSplitClassifier()
(in
SensitivityAnalysersTests
)
testLabelSplitter()
(in
SplitterTests
)
tofile()
(in
ColumnData
)
testAnova()
(in
StatsTests
)
testLARS()
(in
LARSTests
)
tofile()
(in
SampleAttributes
)
testAnovaCompliance()
(in
StatsTestsScipy
)
testLARSSensitivities()
(in
LARSTests
)
topo
(in
mvpa.misc.plot
)
testApplyMapper()
(in
DatasetTests
)
testLARSState()
(in
LARSTests
)
toRealSpace()
(in
SpaceTransformation
)
testAssignment()
(in
HamsterHelperTests
)
testLinearSVMWeights()
(in
SensitivityAnalysersTests
)
toVoxelSpace()
(in
SpaceTransformation
)
testAtlases()
(in
AtlasesTests
)
testLinearSVMWeightsPerClass()
(in
SensitivityAnalysersTests
)
tr
(in
MelodicResults
)
testAttributes()
(in
DatasetTests
)
testLoad()
(in
EEPDatasetTests
)
TraceBack
(in
mvpa.base.verbosity
)
testAUC()
(in
ErrorsTests
)
testMapOverlap()
(in
SupportFxTests
)
train()
(in
Classifier
)
testAutoOptimizePCA()
(in
PCAMapperTests
)
testMappedClassifier()
(in
ClassifiersTests
)
train()
(in
Classifier
)
TestBases
(in
mvpa.tests.test_base
)
testMappedClassifierSensitivityAnalyzer()
(in
SensitivityAnalysersTests
)
train()
(in
PredictionsCombiner
)
testBasic()
(in
ArgsHelpersTest
)
testMapperAliases()
(in
DenseArrayMapperTests
)
train()
(in
ChainMapper
)
testBasic()
(in
CmdlineHelpersTest
)
testMapping()
(in
MetaDatasetTests
)
train()
(in
CombinedMapper
)
testBasic()
(in
SensitivityAnalysersTests
)
testMatchDistribution()
(in
StatsTestsScipy
)
train()
(in
Mapper
)
testBasic()
(in
DochelpersTests
)
testMixed()
(in
ParamsTests
)
train()
(in
Mapper
)
testBasic()
(in
ReportTest
)
testMofNCombinations()
(in
SupportFxTests
)
train()
(in
ProjectionMapper
)
testBasic()
(in
SuiteTest
)
testMoreSVD()
(in
SVDMapperTests
)
train()
(in
ProjectionMapper
)
testBasicFunctioning()
(in
HyperAlignmentTests
)
testMulticlassClassifier()
(in
ClassifiersTests
)
train()
(in
LLEMapper
)
testBestDetector()
(in
RFETests
)
testMultipleCalls()
(in
NiftiDatasetTests
)
train()
(in
SampleGroupMapper
)
testBinaryDecorator()
(in
ClassifiersTests
)
testMultiStopCrit()
(in
RFETests
)
train()
(in
SimpleSOMMapper
)
testBinds()
(in
MiscDatasetFxTests
)
testMultivariate()
(in
KNNTests
)
traindataset
(in
SVM
)
testBinomdistPPF()
(in
StatsTestsScipy
)
testMultivariate()
(in
SVMTests
)
trained()
(in
Classifier
)
testBlank()
(in
ParamsTests
)
testNBackHistoryStopCrit()
(in
RFETests
)
trained()
(in
Classifier
)
testBlankState()
(in
StateTests
)
testNegativeT()
(in
StatsTestsScipy
)
trained_dataset
(in
Classifier
)
testBoosted()
(in
ClassifiersTests
)
testNGroupSplit()
(in
SplitterTests
)
trained_labels
(in
Classifier
)
testBoostedStatePropagation()
(in
ClassifiersTests
)
testNiftiDataset()
(in
NiftiDatasetTests
)
trained_nsamples
(in
Classifier
)
testBreakPoints()
(in
SupportFxTests
)
testNiftiDatasetFrom3D()
(in
NiftiDatasetTests
)
training_confusion
(in
CrossValidatedTransferError
)
testBVRTC()
(in
IOHelperTests
)
testNiftiDatasetROIMaskNeighbors()
(in
NiftiDatasetTests
)
training_confusion
(in
Classifier
)
testChainMapper()
(in
MetaDatasetTests
)
testNiftiMapper()
(in
NiftiDatasetTests
)
training_confusion
(in
ClassifierError
)
testChiSquare()
(in
StatsTestsScipy
)
testNiftiScalingData()
(in
NiftiDatasetTests
)
training_time
(in
Classifier
)
testChiSquareSearchlight()
(in
SearchlightTests
)
testNiftiSelfMapper()
(in
NiftiDatasetTests
)
transerror
(in
CrossValidatedTransferError
)
TestClassBlank
(in
mvpa.tests.test_state
)
testNMinusOneCVWithMetaDataset()
(in
CrossValidationTests
)
transerror
(in
mvpa.clfs
)
TestClassBlankNoExplicitStates
(in
mvpa.tests.test_state
)
testNoiseClassification()
(in
CrossValidationTests
)
transerrors
(in
CrossValidatedTransferError
)
TestClassEmpty
(in
mvpa.tests.test_state
)
testNoLF()
(in
VerboseOutputTest
)
TransferError
(in
mvpa.clfs.transerror
)
testClassifier()
(in
ParamsTests
)
testNoneSplitter()
(in
SplitterTests
)
transformation
(in
mvpa.atlases
)
testClassifierGeneralization()
(in
ClassifiersTests
)
testNonRegressions()
(in
RegressionsTests
)
TransformationBase
(in
mvpa.atlases.transformation
)
TestClassParametrized
(in
mvpa.tests.test_state
)
testNStepsStopCrit()
(in
RFETests
)
transformer()
(in
DatasetMeasure
)
TestClassProper
(in
mvpa.tests.test_state
)
testNullDistProb()
(in
StatsTests
)
transformer()
(in
DatasetMeasure
)
TestClassProperChild
(in
mvpa.tests.test_state
)
testNullDistProb()
(in
ErrorsTests
)
transformers
(in
mvpa.misc
)
testCoarsenChunks()
(in
MiscDatasetFxTests
)
testNullDistProbAny()
(in
StatsTestsScipy
)
TransformerTests
(in
mvpa.tests.test_transformers
)
testColumnDataFromFile()
(in
IOHelperTests
)
testOddEvenSplit()
(in
SplitterTests
)
transformWithBoxcar()
(in
mvpa.misc.support
)
testCombinedMapper()
(in
MetaDatasetTests
)
testOnceLogger()
(in
VerboseOutputTest
)
TreeClassifier
(in
mvpa.clfs.meta
)
testCombinedPatternAndFeatureMasking()
(in
DatasetTests
)
testOrigMaskExtraction()
(in
MaskedDatasetTests
)
truevar_per_ic
(in
MelodicResults
)
testCombinedPatternAndFeatureMasking()
(in
MaskedDatasetTests
)
testOverAxis()
(in
TransformerTests
)
TScoredFeaturewiseMeasure
(in
mvpa.measures.splitmeasure
)
testCompareToZscore()
(in
ZScoreMapperTests
)
testParametrized()
(in
StateTests
)
TuebingenMEG
(in
mvpa.misc.io.meg
)
testConfig()
(in
ConfigTests
)
testPartialSearchlightWithFullReport()
(in
SearchlightTests
)
TuebingenMEGSensorLocations
(in
mvpa.misc.io.base
)
testConfusionBasedError()
(in
ErrorsTests
)
testPatternMerge()
(in
DatasetTests
)
typemap
(in
mvpa.clfs.libsmlrc.ctypes_helper
)
testConfusionMatrix()
(in
ErrorsTests
)
testPatternMerge()
(in
MaskedDatasetTests
)
TypeProxy
(in
mvpa.atlases.transformation
)
U
uniqueValues
(in
AttributeWithUnique
)
untrain()
(in
ClassifierCombiner
)
untrain()
(in
SensitivityBasedFeatureSelection
)
UnknownStateError
(in
mvpa.misc.exceptions
)
untrain()
(in
CombinedClassifier
)
untrain()
(in
BoostedClassifierSensitivityAnalyzer
)
unsparsify
(in
SMLR
)
untrain()
(in
FeatureSelectionClassifier
)
untrain()
(in
CombinedFeaturewiseDatasetMeasure
)
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(in
Classifier
)
untrain()
(in
ProxyClassifier
)
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(in
DatasetMeasure
)
untrain()
(in
Classifier
)
untrain()
(in
TreeClassifier
)
untrain()
(in
DatasetMeasure
)
untrain()
(in
GNB
)
untrain()
(in
SVM
)
untrain()
(in
ProxyClassifierSensitivityAnalyzer
)
untrain()
(in
GPR
)
untrain()
(in
ClassifierError
)
untrain()
(in
Sensitivity
)
untrain()
(in
kNN
)
untrain()
(in
CombinedFeatureSelection
)
untrain()
(in
Sensitivity
)
untrain()
(in
SVMParameter
)
untrain()
(in
FeatureSelection
)
untrain()
(in
SplitFeaturewiseDatasetMeasure
)
untrain()
(in
SVM
)
untrain()
(in
FeatureSelection
)
untrain()
(in
BoostedClassifier
)
untrain()
(in
FeatureSelectionPipeline
)
V
value
(in
CollectableAttribute
)
verbose
(in
mvpa.base
)
versions
(in
mvpa.base.externals
)
value
(in
Parameter
)
VerboseOutputTest
(in
mvpa.tests.test_verbosity
)
voxdim
(in
XMLBasedAtlas
)
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(in
Classifier
)
verbosity
(in
mvpa.base
)
vproperty
(in
mvpa.misc
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var
(in
PCAMapper
)
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(in
XMLBasedAtlas
)
VProperty
(in
mvpa.misc.vproperty
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Variance1SVFx
(in
mvpa.misc.errorfx
)
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(in
XMLBasedAtlas
)
variances
(in
GPRLinearWeights
)
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(in
mvpa.misc.support
)
W
warehouse
(in
mvpa.atlases
)
wavelet
(in
mvpa.mappers
)
where()
(in
Dataset
)
warehouse
(in
mvpa.clfs
)
WaveletMappersTests
(in
mvpa.tests.test_waveletmapper
)
whichSet()
(in
Collection
)
Warehouse
(in
mvpa.clfs.warehouse
)
WaveletPacketMapper
(in
mvpa.mappers.wavelet
)
who_knows_maybe_something_to_store_optionally
(in
Hyperalignment
)
warning
(in
mvpa.base
)
WaveletTransformationMapper
(in
mvpa.mappers.wavelet
)
wr1996()
(in
mvpa.misc.data_generators
)
WarningLog
(in
mvpa.base
)
weights
(in
ENET
)
WTF
(in
mvpa.base.info
)
warnings_bt
(in
mvpa.base
)
weights
(in
_GLMNET
)
wtf()
(in
mvpa.base.info
)
warnings_btlevels
(in
mvpa.base
)
weights
(in
LARS
)
warnings_maxcount
(in
mvpa.base
)
weights
(in
SMLR
)
X
XAVRSensorLocations
(in
mvpa.misc.io.base
)
XMLAtlasException
(in
mvpa.atlases.base
)
xuniqueCombinations()
(in
mvpa.misc.support
)
xml()
(in
Report
)
XMLBasedAtlas
(in
mvpa.atlases.base
)
Z
zscore
(in
mvpa.mappers
)
ZScoreMapper
(in
mvpa.mappers.zscore
)
zstat
(in
GLM
)
zscore()
(in
mvpa.datasets.miscfx
)
ZScoreMapperTests
(in
mvpa.tests.test_zscoremapper
)
_
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(in
SummaryStatistics
)
__init__()
(in
CorrStability
)
_degenerate_allowed_exceptions
(in
mvpa.tests.test_clf
)
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(in
Dataset
)
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(in
DSMDatasetMeasure
)
_demeanData()
(in
ProjectionMapper
)
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(in
mvpa.base.dochelpers
)
__init__()
(in
GLM
)
_demeanData()
(in
ProjectionMapper
)
__call__()
(in
Hyperalignment
)
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(in
IterativeRelief
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_DEV__doc
(in
TreeClassifier
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(in
TransformationBase
)
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(in
IterativeReliefOnline
)
_DEV__doc__
(in
Classifier
)
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(in
TypeProxy
)
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(in
IterativeReliefOnline_Devel
)
_DEV__DOC__
(in
mvpa.clfs.kernel
)
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(in
WarningLog
)
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(in
IterativeRelief_Devel
)
_DEV__doc__
(in
mvpa.clfs.sg.svm
)
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(in
_SingletonType
)
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(in
NoisePerturbationSensitivity
)
_DEV__doc__
(in
ProjectionMapper
)
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(in
__Singleton
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(in
PLS
)
_DEV__doc__
(in
ProcrusteanMapper
)
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(in
DebugLogger
)
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(in
Searchlight
)
_DEV__doc__
(in
ClassWithCollections
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(in
LevelLogger
)
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(in
SplitFeaturewiseMeasure
)
_DEV_DOC
(in
MCNullDist
)
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(in
Logger
)
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(in
TScoredFeaturewiseMeasure
)
_DEV_DOC
(in
mvpa.misc.transformers
)
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(in
OnceLogger
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(in
AttributeWithUnique
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(in
mvpa.clfs.knn
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RelativeTime
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CollectableAttribute
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(in
mvpa.tests.tests_warehouse
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SetLogger
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(in
StateVariable
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(in
mvpa.base.report_dummy
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(in
TraceBack
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BrainVoyagerRTC
)
_EmptyClass
(in
mvpa.support._copy
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(in
ClassifierCombiner
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(in
OptionGroups
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_ErrorFx
(in
mvpa.misc.errorfx
)
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(in
MaximalVote
)
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(in
ConvergenceError
)
_expandRadius()
(in
DescreteMetric
)
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(in
MeanPrediction
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(in
DatasetError
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(in
Dataset
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(in
PredictionsCombiner
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(in
InvalidHyperparameterError
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_fig_ext_default
(in
mvpa.base.report
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(in
rv_semifrozen
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(in
UnknownStateError
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(in
WaveletPacketMapper
)
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(in
ClassifierError
)
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(in
FslEV3
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(in
WaveletTransformationMapper
)
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(in
Splitter
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(in
FslGLMDesign
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(in
_WaveletMapper
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(in
CombinedFeatureSelection
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(in
McFlirtParams
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(in
ColumnData
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(in
FeatureSelection
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(in
MelodicResults
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CollectableAttribute
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(in
FeatureSelectionPipeline
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ColumnData
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(in
StateVariable
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(in
SensitivityBasedFeatureSelection
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DataReader
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(in
mvpa.datasets.nifti
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(in
BestDetector
)
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(in
SampleAttributes
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(in
ColumnData
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(in
ElementSelector
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(in
SensorLocations
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SimpleSOMMapper
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(in
FixedErrorThresholdStopCrit
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(in
TuebingenMEGSensorLocations
)
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(in
DescreteMetric
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(in
MultiStopCrit
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(in
XAVRSensorLocations
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(in
_SVM
)
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(in
NBackHistoryStopCrit
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EEPBin
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_getDefaultC()
(in
_SVM
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NStepsStopCrit
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Hamster
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(in
_SVM
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(in
RangeElementSelector
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(in
TuebingenMEG
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_getDefaultGamma()
(in
_SVM
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(in
StoppingCriterion
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(in
Parameter
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(in
StateCollection
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(in
TailSelector
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(in
AttributesCollector
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(in
Classifier
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(in
IFS
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(in
AttributesCollector
)
_getFeatureIds()
(in
Classifier
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(in
RFE
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(in
ClassWithCollections
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_getFeatureIds()
(in
ENET
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(in
Mapper
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(in
ClassWithCollections
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_getFeatureIds()
(in
_GLMNET
)
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(in
Mapper
)
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(in
Collection
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_getFeatureIds()
(in
LARS
)
__call__()
(in
DatasetMeasure
)
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(in
Harvestable
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_getFeatureIds()
(in
BoostedClassifier
)
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(in
DatasetMeasure
)
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(in
StateCollection
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_getFeatureIds()
(in
FeatureSelectionClassifier
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__call__()
(in
Sensitivity
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(in
DSMatrix
)
_getFeatureIds()
(in
SMLR
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(in
Sensitivity
)
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(in
Event
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_getFilter()
(in
DescreteMetric
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(in
DSMDatasetMeasure
)
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(in
Harvester
)
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(in
OptionGroups
)
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(in
AUCErrorFx
)
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(in
HarvesterCall
)
_getHandlers()
(in
Logger
)
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(in
CorrErrorFx
)
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(in
MapOverlap
)
_getHandlers()
(in
Logger
)
__call__()
(in
CorrErrorPFx
)
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(in
DistPValue
)
_getIndexes()
(in
mvpa.mappers.wavelet
)
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(in
MeanMismatchErrorFx
)
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(in
OverAxis
)
_getLevels()
(in
XMLBasedAtlas
)
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(in
RMSErrorFx
)
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(in
VProperty
)
_getLevels()
(in
XMLBasedAtlas
)
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(in
RelativeRMSErrorFx
)
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(in
ParametrizedClassifierExtended
)
_getLevelsDict()
(in
XMLBasedAtlas
)
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(in
Variance1SVFx
)
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(in
SillySensitivityAnalyzer
)
_getLevelsDict()
(in
XMLBasedAtlas
)
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(in
_ErrorFx
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(in
TestClassParametrized
)
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(in
ReferencesAtlas
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(in
Harvester
)
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(in
SameSignClassifier
)
_getLevelsDict_virtual()
(in
XMLBasedAtlas
)
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(in
MapOverlap
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(in
SameSignClassifier
)
_getLevelsDict_virtual()
(in
XMLBasedAtlas
)
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(in
DistPValue
)
__known_chunking_methods
(in
mvpa.misc.io.base
)
_getListing()
(in
Collection
)
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(in
OverAxis
)
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(in
mvpa.datasets.nifti
)
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(in
CollectableAttribute
)
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(in
SillySensitivityAnalyzer
)
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(in
mvpa.support.griddata
)
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(in
Collection
)
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(in
mvpa.base.externals
)
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(in
Hamster
)
_getNElements()
(in
FixedNElementTailSelector
)
__check_griddata()
(in
mvpa.base.externals
)
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(in
ClassWithCollections
)
_getNElements()
(in
FractionTailSelector
)
__check_in_ipython()
(in
mvpa.base.externals
)
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(in
ClassWithCollections
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_getNElements()
(in
TailSelector
)
__check_libsvm_verbosity_control()
(in
mvpa.base.externals
)
__parameters_str_re
(in
mvpa.base.dochelpers
)
_getNLevels()
(in
PyMVPAAtlas
)
__check_matplotlib()
(in
mvpa.base.externals
)
__preamble()
(in
Report
)
_getNLevelsVirtual()
(in
PyMVPAAtlas
)
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(in
mvpa.base.externals
)
__re_params
(in
mvpa.base.dochelpers
)
_getNLevelsVirtual()
(in
ReferencesAtlas
)
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(in
mvpa.base.externals
)
__re_spliter1
(in
mvpa.base.dochelpers
)
_getNSamplesPerAttr()
(in
Dataset
)
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(in
mvpa.base.externals
)
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(in
mvpa.base.dochelpers
)
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(in
Collection
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(in
mvpa.base.externals
)
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Label
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(in
ProjectionMapper
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(in
mvpa.base.externals
)
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LabelsLevel
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(in
ProjectionMapper
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(in
mvpa.base.externals
)
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(in
Level
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(in
Dataset
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(in
mvpa.base.externals
)
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(in
XMLAtlasException
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(in
CustomSplitter
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(in
mvpa.base.externals
)
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ConfigManager
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HalfSplitter
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(in
mvpa.base.externals
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WTF
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NFoldSplitter
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(in
mvpa.base.externals
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_SVM
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NGroupSplitter
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(in
mvpa.base.externals
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_SVM
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(in
NoneSplitter
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(in
mvpa.base.externals
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Classifier
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OddEvenSplitter
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SmartVersion
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(in
Classifier
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(in
Splitter
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SequenceStats
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BLR
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(in
Dataset
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SVM
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ENET
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mvpa.misc.support
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SVMParameter
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GPR
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mvpa.misc.support
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ClassifierError
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Kernel
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AttributeWithUnique
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TransferError
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KernelConstant
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CollectableAttribute
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SVMParameter
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KernelExponential
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mvpa.clfs.glmnet
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svm_model
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KernelLinear
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mvpa.clfs.gpr
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svm_parameter
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KernelMatern_3_2
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Harvestable
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svm_problem
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KernelRationalQuadratic
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Harvestable
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Logger
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KernelSquaredExponential
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mvpa.mappers.zscore
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Logger
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kNN
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mvpa.misc.state
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SVMModel
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LARS
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mvpa.base.dochelpers
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_SVMCParameter
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SVMModel
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GPR
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SVMParameter
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SVMParameter
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Collection
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SVMProblem
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SVMProblem
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StateCollection
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mvpa.datasets.miscfx_sp
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BinaryClassifier
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MaskMapper
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LabelsAtlas
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BoostedClassifier
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MaskMapper
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PyMVPAAtlas
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CombinedClassifier
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CollectableAttribute
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ReferencesAtlas
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MulticlassClassifier
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mvpa.misc.plot.mri
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FSLAtlas
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ProxyClassifier
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Collection
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FSLProbabilisticAtlas
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TreeClassifier
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StateCollection
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ClassifierError
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PLR
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mvpa.support._copy
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ConfusionBasedError
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RidgeReg
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SVM
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TransferError
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FixedNullDist
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SVM
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MCNullDist
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mvpa.base.externals
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ChannelDataset
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mvpa.misc.state
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EEPDataset
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NullDist
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MappedDataset
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SVM
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CustomSplitter
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SequenceStats
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SVM
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HalfSplitter
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FixedNElementTailSelector
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mvpa.clfs.warehouse
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NFoldSplitter
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FractionTailSelector
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SVM
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NGroupSplitter
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_Dataset
)
_clf_internals
(in
Classifier
)
_STATS_DESCRIPTION
(in
RegressionStatistics
)
__init__()
(in
ChannelDataset
)
_clf_internals
(in
BLR
)
_STATS_DESCRIPTION
(in
SummaryStatistics
)
__init__()
(in
EEPDataset
)
_clf_internals
(in
ENET
)
_STRATEGIES
(in
Splitter
)
__init__()
(in
EventDataset
)
_clf_internals
(in
GLMNET_C
)
_SVM
(in
mvpa.clfs._svmbase
)
__init__()
(in
MappedDataset
)
_clf_internals
(in
GLMNET_R
)
_svm
(in
mvpa.clfs.libsvmc
)
__init__()
(in
MaskedDataset
)
_clf_internals
(in
_GLMNET
)
_SVM_PARAMS
(in
_SVM
)
__init__()
(in
MetaDataset
)
_clf_internals
(in
GNB
)
_svmbase
(in
mvpa.clfs
)
__init__()
(in
SequenceStats
)
_clf_internals
(in
GPR
)
_SVMCParameter
(in
SVMParameter
)
__init__()
(in
ERNiftiDataset
)
_clf_internals
(in
kNN
)
_swig_getattr()
(in
mvpa.clfs.libsvmc.svmc
)
__init__()
(in
NiftiDataset
)
_clf_internals
(in
LARS
)
_swig_repr()
(in
mvpa.clfs.libsvmc.svmc
)
__init__()
(in
CustomSplitter
)
_clf_internals
(in
SVM
)
_swig_setattr()
(in
mvpa.clfs.libsvmc.svmc
)
__init__()
(in
HalfSplitter
)
_clf_internals
(in
FeatureSelectionClassifier
)
_swig_setattr_nondynamic()
(in
mvpa.clfs.libsvmc.svmc
)
__init__()
(in
NFoldSplitter
)
_clf_internals
(in
PLR
)
_sys_excepthook
(in
mvpa
)
__init__()
(in
NGroupSplitter
)
_clf_internals
(in
RidgeReg
)
_t2s()
(in
mvpa.base.info
)
__init__()
(in
NoneSplitter
)
_clf_internals
(in
SVM
)
_test()
(in
mvpa.support._copy
)
__init__()
(in
OddEvenSplitter
)
_clf_internals
(in
SMLR
)
_test_classes
(in
mvpa.tests.test_report
)
__init__()
(in
Splitter
)
_clf_internals
(in
SameSignClassifier
)
_testCompareToOld()
(in
WaveletMappersTests
)
__init__()
(in
CombinedFeatureSelection
)
_closeOpenedHandlers()
(in
Logger
)
_testSelectReOrder()
(in
DenseArrayMapperTests
)
__init__()
(in
FeatureSelection
)
_closeOpenedHandlers()
(in
Logger
)
_tosg()
(in
mvpa.clfs.sg.svm
)
__init__()
(in
FeatureSelectionPipeline
)
_cls_repr()
(in
Collection
)
_train()
(in
Classifier
)
__init__()
(in
SensitivityBasedFeatureSelection
)
_cls_repr()
(in
ParameterCollection
)
_train()
(in
Classifier
)
__init__()
(in
BestDetector
)
_cls_repr()
(in
SampleAttributesCollection
)
_train()
(in
BLR
)
__init__()
(in
ElementSelector
)
_cls_repr()
(in
StateCollection
)
_train()
(in
ENET
)
__init__()
(in
FixedErrorThresholdStopCrit
)
_col2class
(in
mvpa.misc.state
)
_train()
(in
_GLMNET
)
__init__()
(in
FixedNElementTailSelector
)
_COLLECTIONS_ORDER
(in
mvpa.misc.state
)
_train()
(in
GNB
)
__init__()
(in
FractionTailSelector
)
_COLLISION_RESOLUTIONS
(in
BoxcarMapper
)
_train()
(in
GPR
)
__init__()
(in
MultiStopCrit
)
_compare_lists()
(in
XMLBasedAtlas
)
_train()
(in
kNN
)
__init__()
(in
NBackHistoryStopCrit
)
_compare_lists()
(in
XMLBasedAtlas
)
_train()
(in
LARS
)
__init__()
(in
NStepsStopCrit
)
_compute()
(in
ConfusionMatrix
)
_train()
(in
SVM
)
__init__()
(in
RangeElementSelector
)
_compute()
(in
ROCCurve
)
_train()
(in
BinaryClassifier
)
__init__()
(in
TailSelector
)
_compute()
(in
RegressionStatistics
)
_train()
(in
BoostedClassifier
)
__init__()
(in
IFS
)
_compute()
(in
SummaryStatistics
)
_train()
(in
CombinedClassifier
)
__init__()
(in
RFE
)
_computeFilter()
(in
DescreteMetric
)
_train()
(in
FeatureSelectionClassifier
)
__init__()
(in
DenseArrayMapper
)
_computeInfluenceKernel()
(in
SimpleSOMMapper
)
_train()
(in
MappedClassifier
)
__init__()
(in
ChainMapper
)
_computeRecon()
(in
ProjectionMapper
)
_train()
(in
MulticlassClassifier
)
__init__()
(in
CombinedMapper
)
_computeRecon()
(in
ProjectionMapper
)
_train()
(in
ProxyClassifier
)
__init__()
(in
Mapper
)
_computeRecon()
(in
SVDMapper
)
_train()
(in
SplitClassifier
)
__init__()
(in
ProjectionMapper
)
_copy
(in
mvpa.support
)
_train()
(in
TreeClassifier
)
__init__()
(in
BoxcarMapper
)
_copy
(in
mvpa.support.copy
)
_train()
(in
PLR
)
__init__()
(in
ICAMapper
)
_copy_dispatch
(in
mvpa.support._copy
)
_train()
(in
RidgeReg
)
__init__()
(in
LLEMapper
)
_copy_immutable()
(in
mvpa.support._copy
)
_train()
(in
SVM
)
__init__()
(in
MaskMapper
)
_copy_inst()
(in
mvpa.support._copy
)
_train()
(in
SMLR
)
__init__()
(in
DescreteMetric
)
_copy_states_()
(in
StateCollection
)
_train()
(in
ProjectionMapper
)
__init__()
(in
PCAMapper
)
_copy_with_constructor()
(in
mvpa.support._copy
)
_train()
(in
ICAMapper
)
__init__()
(in
ProcrusteanMapper
)
_copy_with_copy_method()
(in
mvpa.support._copy
)
_train()
(in
PCAMapper
)
__init__()
(in
SampleGroupMapper
)
_cStepwiseRegression
(in
mvpa.clfs.smlr
)
_train()
(in
ProcrusteanMapper
)
__init__()
(in
SimpleSOMMapper
)
_customizeDoc()
(in
_SVM
)
_train()
(in
SVDMapper
)
__init__()
(in
SVDMapper
)
_customizeDoc()
(in
_SVM
)
_train()
(in
ZScoreMapper
)
__init__()
(in
WaveletPacketMapper
)
_customizeDocInherit
(in
LinearSVMWeights
)
_train()
(in
SameSignClassifier
)
__init__()
(in
_WaveletMapper
)
_Dataset
(in
mvpa.datasets.base
)
_train()
(in
SameSignClassifier
)
__init__()
(in
ZScoreMapper
)
_debugCallback()
(in
mvpa.misc.cmdline
)
_uniqueattributes
(in
Dataset
)
__init__()
(in
BoostedClassifierSensitivityAnalyzer
)
_deepcopy_atomic()
(in
mvpa.support._copy
)
_unsparsify_weights()
(in
SMLR
)
__init__()
(in
CombinedFeaturewiseDatasetMeasure
)
_deepcopy_dict()
(in
mvpa.support._copy
)
_updateOwner()
(in
Collection
)
__init__()
(in
DatasetMeasure
)
_deepcopy_dispatch
(in
mvpa.support._copy
)
_VALID_BACKENDS
(in
mvpa.clfs.svm
)
__init__()
(in
FeaturewiseDatasetMeasure
)
_deepcopy_inst()
(in
mvpa.support._copy
)
_validate_indexes_uniq_sorted()
(in
mvpa.datasets.base
)
__init__()
(in
FeaturewiseDatasetMeasure
)
_deepcopy_list()
(in
mvpa.support._copy
)
_verboseCallback()
(in
mvpa.misc.cmdline
)
__init__()
(in
ProxyClassifierSensitivityAnalyzer
)
_deepcopy_tuple()
(in
mvpa.support._copy
)
_VersionsChecker
(in
mvpa.base.externals
)
__init__()
(in
Sensitivity
)
_def_sep
(in
mvpa.misc.state
)
_waveletFamilyCallback()
(in
mvpa.misc.cmdline
)
__init__()
(in
Sensitivity
)
_DEFAULT_IMPLEMENTATION
(in
mvpa.clfs.smlr
)
_WaveletMapper
(in
mvpa.mappers.wavelet
)
__init__()
(in
SplitFeaturewiseDatasetMeasure
)
_defaultC
(in
mvpa.clfs.svm
)
_whitespace_re
(in
mvpa.misc.param
)
__init__()
(in
StaticDatasetMeasure
)
_defaultNu
(in
mvpa.clfs.svm
)
__init__()
(in
CorrCoef
)
_DEFAULTS
(in
ConfigManager
)
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PyMVPA: Python MultiVariate Pattern Analysis
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