Module base

Base classes for Anatomy atlases support

TODOs:

major optimization. Now code is sloppy and slow -- plenty of checks etc

mvpa.atlases.base module contains support for various atlases

Package Tree for base

Classes

ReferencesLevel
Level which carries reference points

Base

BaseAtlas
Base class for the atlases.

XMLBasedAtlas

Label
Represents a label. Just to bring all relevant information together

Level
Represents a level. Just to bring all relevant information together

LabelsLevel
Level of labels.

Talairach

PyMVPAAtlas
Base class for PyMVPA atlases, such as LabelsAtlas and ReferenceAtlas

LabelsAtlas
Atlas which provides labels for the given coordinate

ReferencesAtlas
Atlas which provides references to the other atlases.

Exceptions

XMLAtlasException
Exception to be thrown if smth goes wrong dealing with XML based atlas

Functions

checkRange(coord, range)
Check if coordinates are within range (0,0,0) - (range) Return True on success

source code

Imports: externals, etree, objectify, enhancedDocString, os, re, N, norm, SpaceTransformation, Linear, reuseAbsolutePath, NiftiImage, warning, debug

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