Home       Trees       Indices       Help   
PyMVPA: Python MultiVariate Pattern Analysis
Package mvpa :: Package atlases :: Module base :: Class ReferencesAtlas
[hide private]
[frames] | no frames]

Class ReferencesAtlas

source code

Atlas which provides references to the other atlases.

Example: the atlas which has references to the closest points (closest Gray, etc) in another atlas.

Instance Methods [hide private]
 
__init__(self, distance=0, *args, **kwargs)
Initialize ReferencesAtlas		 source code
 
_getNLevelsVirtual(self) source code
 
setReferenceLevel(self, level)
Set the level which will be queried		 source code
 
labelVoxel(self, c, levels=None) source code
 
levelsListing(self) source code
 
_getLevelsDict_virtual(self) source code
 
setDistance(self, distance)
Set desired maximal distance for the reference		 source code

Inherited from PyMVPAAtlas (private): _getNLevels, _loadData, _loadImages

Inherited from XMLBasedAtlas: __getattr__, __getitem__, labelPoint, loadAtlas, setCoordT, version

Inherited from XMLBasedAtlas (private): _checkRange, _getLevels, _getLevelsDict

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Static Methods [hide private]

Inherited from PyMVPAAtlas (private): _checkVersion

Inherited from XMLBasedAtlas (private): _children_tags, _compare_lists

Class Variables [hide private]
  __doc__ = enhancedDocString('ReferencesAtlas', locals(), PyMVP...
  distance = property(fget= lambda self: self.__distance, fset= ...

Inherited from PyMVPAAtlas: Nlevels, source, space, spaceFlavor

Inherited from XMLBasedAtlas: coordT, extent, levels_dict, origin, spaceT, voxdim

Properties [hide private]

Inherited from object: __class__

Method Details [hide private]

__init__(self, distance=0, *args, **kwargs)
(Constructor)

source code 
Initialize ReferencesAtlas
Parameters:
  • filename - Filename for the xml definition of the atlas
  • resolution - Some atlases link to multiple images at different resolutions. if None -- best resolution is selected using 0th dimension resolution
  • image_file - If None, overrides filename for the used imagefile, so it could load a custom (re-registered) atlas maps
  • query_voxel - By default [x,y,z] assumes coordinates in space, but if query_voxel is True, they are assumed to be voxel coordinates
  • coordT - Optional transformation to apply first
  • levels - What levels by default to operate on
Overrides: object.__init__

_getNLevelsVirtual(self)

source code 
Overrides: PyMVPAAtlas._getNLevelsVirtual

levelsListing(self)

source code 
Overrides: XMLBasedAtlas.levelsListing

_getLevelsDict_virtual(self)

source code 
Overrides: XMLBasedAtlas._getLevelsDict_virtual

Class Variable Details [hide private]

__doc__

Value:
enhancedDocString('ReferencesAtlas', locals(), PyMVPAAtlas)

distance

Value:
property(fget= lambda self: self.__distance, fset= setDistance)

   Home       Trees       Indices       Help   
PyMVPA: Python MultiVariate Pattern Analysis
Generated by Epydoc 3.0.1 on Mon Apr 23 23:09:15 2012 http://epydoc.sourceforge.net