mvpa.tests

Package tests

Submodules

mvpa.tests.main: Unit test console interface for PyMVPA
mvpa.tests.runner: Helper module to enable profiling of the testcase
mvpa.tests.test_args: Unit tests for PyMVPA args helpers
mvpa.tests.test_arraymapper: Unit tests for PyMVPA dense array mapper
mvpa.tests.test_atlases: Unit tests for PyMVPA atlases
mvpa.tests.test_base: Test some base functionality which did not make it into a separate unittests
mvpa.tests.test_boxcarmapper: Unit tests for PyMVPA Boxcar mapper
mvpa.tests.test_clf: Unit tests for PyMVPA basic Classifiers
mvpa.tests.test_clfcrossval: Unit tests for PyMVPA classifier cross-validation
mvpa.tests.test_cmdline: Unit tests for PyMVPA cmdline helpers
mvpa.tests.test_config: Unit tests for PyMVPA dense array mapper
mvpa.tests.test_datameasure: Unit tests for PyMVPA SplittingSensitivityAnalyzer
mvpa.tests.test_dataset: Unit tests for PyMVPA dataset handling
mvpa.tests.test_datasetfx: Unit tests for PyMVPA miscelaneouse functions operating on datasets
mvpa.tests.test_datasetfx_sp: Unit tests for PyMVPA miscelaneouse functions operating on datasets and requiring SciPy
mvpa.tests.test_datasetng: Tests for the dataset implementation
mvpa.tests.test_dochelpers: Unit tests for PyMVPA dochelpers
mvpa.tests.test_eepdataset: Unit tests for PyMVPA EEP dataset
mvpa.tests.test_enet: Unit tests for PyMVPA least angle regression (ENET) classifier
mvpa.tests.test_externals: Test externals checking
mvpa.tests.test_gnb: Unit tests for PyMVPA GNB classifier
mvpa.tests.test_gpr: Unit tests for PyMVPA GPR.
mvpa.tests.test_hamster: Unit tests for PyMVPA Hamster
mvpa.tests.test_hyperalignment: Unit tests for PyMVPA ...
mvpa.tests.test_icamapper: Unit tests for PyMVPA ICA mapper
mvpa.tests.test_ifs: Unit tests for PyMVPA incremental feature search.
mvpa.tests.test_iohelpers: Unit tests for PyMVPA IO helpers
mvpa.tests.test_kernel: Unit tests for PyMVPA kernels
mvpa.tests.test_knn: Unit tests for PyMVPA kNN classifier
mvpa.tests.test_lars: Unit tests for PyMVPA least angle regression (LARS) classifier
mvpa.tests.test_maskeddataset: Unit tests for PyMVPA pattern handling
mvpa.tests.test_meg: Unit tests for PyMVPA MEG stuff
mvpa.tests.test_metadataset: Unit tests for PyMVPA meta dataset handling
mvpa.tests.test_neighbor: Unit tests for PyMVPA metrics
mvpa.tests.test_niftidataset: Unit tests for PyMVPA nifti dataset
mvpa.tests.test_params: Unit tests for PyMVPA Parameter class.
mvpa.tests.test_pcamapper: Unit tests for PyMVPA PCA mapper
mvpa.tests.test_perturbsensana: Unit tests for PyMVPA perturbation sensitivity analyzer.
mvpa.tests.test_plr: Unit tests for PyMVPA logistic regression classifier
mvpa.tests.test_pls: Unit tests for Partial Least Squares measures.
mvpa.tests.test_procrust: Unit tests for PyMVPA Procrustean mapper
mvpa.tests.test_regr: Unit tests for PyMVPA Regressions
mvpa.tests.test_report: Unit tests for PyMVPA simple report facility
mvpa.tests.test_rfe: Unit tests for PyMVPA recursive feature elimination
mvpa.tests.test_ridge: Unit tests for PyMVPA ridge regression classifier
mvpa.tests.test_samplegroupmapper: Unit tests for PyMVPA SampleGroup mapper
mvpa.tests.test_searchlight: Unit tests for PyMVPA searchlight algorithm
mvpa.tests.test_smlr: Unit tests for PyMVPA sparse multinomial logistic regression classifier
mvpa.tests.test_som: Unit tests for PyMVPA SOM mapper
mvpa.tests.test_splitsensana: Unit tests for PyMVPA SplittingSensitivityAnalyzer
mvpa.tests.test_splitter: Unit tests for PyMVPA pattern handling
mvpa.tests.test_state: Unit tests for PyMVPA State parent class
mvpa.tests.test_stats: Unit tests for PyMVPA stats helpers
mvpa.tests.test_stats_sp: Unit tests for PyMVPA stats helpers -- those requiring scipy
mvpa.tests.test_suite: Unit test for PyMVPA mvpa.suite() of being loading ok
mvpa.tests.test_support: Unit tests for PyMVPA serial feature inclusion algorithm
mvpa.tests.test_svdmapper: Unit tests for PyMVPA SVD mapper
mvpa.tests.test_svm: Unit tests for SVM classifier
mvpa.tests.test_transerror: Unit tests for PyMVPA classifier cross-validation
mvpa.tests.test_transformers: Unit tests for PyMVPA transformers.
mvpa.tests.test_verbosity: Unit tests for PyMVPA verbose and debug output
mvpa.tests.test_waveletmapper: Unit tests for PyMVPA Wavelet mappers
mvpa.tests.test_zscoremapper: Unit tests for PyMVPA ZScore mapper
mvpa.tests.tests_warehouse: Miscelaneous functions/datasets to be used in the unit tests
mvpa.tests.tests_warehouse_clfs: Provides clfs dictionary with instances of all available classifiers.

Functions

collectTestSuites()
Runs over all tests it knows and composes a dictionary with test suite instances as values and IDs as keys.

source code

run(limit=None, verbosity=None)
Runs the full or a subset of the PyMVPA unittest suite.

source code

Imports: unittest, np, _random_seed, cfg, externals, warning

Function Details

[hide private]

collectTestSuites()

source code

Runs over all tests it knows and composes a dictionary with test suite
instances as values and IDs as keys. IDs are the filenames of the unittest
without '.py' extension and 'test_' prefix.

During collection this function will run a full and verbose test for all
known externals.

run(limit=None, verbosity=None)

source code

Runs the full or a subset of the PyMVPA unittest suite.

Parameters:

limit, None, |, list - If None, the full test suite is run. Alternatively, a list with test IDs can be provides. IDs are the base filenames of the test implementation, e.g. the ID for the suite in 'mvpa/tests/test_niftidataset.py' is 'niftidataset'.
verbosity, None, |, int - Verbosity of unittests execution. If None, controlled by PyMVPA configuration tests/verbosity. Values higher than 2 enable all Python, NumPy and PyMVPA warnings