Index

A

abbr (mvpa.atlases.base.Label attribute) absminDistance() (in module mvpa.clfs.distance) Absolute() (in module mvpa.misc.transformers) active (mvpa.base.verbosity.SetLogger attribute) AdaptiveNormal (class in mvpa.clfs.stats) AdaptiveNullDist (class in mvpa.clfs.stats) AdaptiveRDist (class in mvpa.clfs.stats) add() (mvpa.clfs.transerror.SummaryStatistics method) (mvpa.misc.cmdline.OptionGroups method) (mvpa.misc.state.Collection method) AFNI aggregateFeatures() (in module mvpa.datasets.miscfx) (mvpa.datasets.base.Dataset method) alternative build procedure analyzer (mvpa.measures.base.ProxyClassifierSensitivityAnalyzer attribute) analyzers (mvpa.measures.base.CombinedFeaturewiseDatasetMeasure attribute)

anova API reference apply() (mvpa.atlases.transformation.Linear method) (mvpa.atlases.transformation.MNI2Tal_MatthewBrett method) (mvpa.atlases.transformation.TransformationBase method) applyMapper() (mvpa.datasets.base.Dataset method) (mvpa.datasets.meta.MetaDataset method) asDescreteTime() (mvpa.misc.support.Event method) asdict() (mvpa.misc.io.hamster.Hamster method) asstring() (mvpa.clfs.transerror.ConfusionMatrix method) (mvpa.clfs.transerror.RegressionStatistics method) (mvpa.clfs.transerror.SummaryStatistics method) Atlas() (in module mvpa.atlases.warehouse) AttributesCollector (class in mvpa.misc.state) AttributeWithUnique (class in mvpa.misc.attributes) AUCErrorFx (class in mvpa.misc.errorfx) aucs (mvpa.clfs.transerror.ROCCurve attribute) autoNullDist() (in module mvpa.clfs.stats)

B

backports BaseAtlas (class in mvpa.atlases.base) BestDetector (class in mvpa.featsel.helpers) bestindex (mvpa.featsel.helpers.BestDetector attribute) bias (mvpa.measures.base.StaticDatasetMeasure attribute) biases (mvpa.clfs.smlr.SMLR attribute) binary packages, [1] BinaryClassifier (class in mvpa.clfs.meta) block-averaging

Block-averaging BLR (class in mvpa.clfs.blr) BoostedClassifier (class in mvpa.clfs.meta) BoostedClassifierSensitivityAnalyzer (class in mvpa.measures.base) BoxcarMapper (class in mvpa.mappers.boxcar) BrainVoyagerRTC (class in mvpa.misc.bv.base) build instructions building from source building on Windows

C

C (mvpa.clfs.libsvmc.svmc.svm_parameter attribute) (mvpa.datasets.base.Dataset attribute) cache_size (mvpa.clfs.libsvmc.svmc.svm_parameter attribute) call (mvpa.misc.support.HarvesterCall attribute) cartesianDistance() (in module mvpa.clfs.distance) cdf() (mvpa.clfs.stats.AdaptiveRDist method) (mvpa.clfs.stats.FixedNullDist method) (mvpa.clfs.stats.MCNullDist method) (mvpa.clfs.stats.Nonparametric method) (mvpa.clfs.stats.NullDist method) cfg ChainMapper (class in mvpa.mappers.base) changelog ChannelDataset (class in mvpa.datasets.channel) channelids (mvpa.datasets.channel.ChannelDataset attribute) channels (mvpa.misc.io.eepbin.EEPBin attribute) checkRange() (in module mvpa.atlases.base) chirpLinear() (in module mvpa.misc.data_generators) chisquare() (in module mvpa.misc.stats) Chunk chunks (mvpa.datasets.base.Dataset attribute) citation classifier Classifier (class in mvpa.clfs.base) classifier error classifier weights ClassifierCombiner (class in mvpa.clfs.meta) ClassifierError (class in mvpa.clfs.transerror) ClassWithCollections (class in mvpa.misc.state) clean() (mvpa.clfs.stats.MCNullDist method) clear() (mvpa.base.report.Report method) clf (mvpa.clfs.meta.ProxyClassifier attribute) (mvpa.clfs.transerror.ClassifierError attribute) (mvpa.measures.base.Sensitivity attribute) clfs (mvpa.clfs.meta.BoostedClassifier attribute) (mvpa.clfs.meta.TreeClassifier attribute) clone() (mvpa.clfs.base.Classifier method) coarsenChunks() (in module mvpa.datasets.miscfx) (mvpa.datasets.base.Dataset method) code swarm coef0 (mvpa.clfs.libsvmc.svmc.svm_parameter attribute) CollectableAttribute (class in mvpa.misc.attributes) Collection (class in mvpa.misc.state) ColumnData (class in mvpa.misc.io.base) combined_analyzer (mvpa.measures.base.BoostedClassifierSensitivityAnalyzer attribute)

CombinedClassifier (class in mvpa.clfs.meta) CombinedFeatureSelection (class in mvpa.featsel.base) CombinedFeaturewiseDatasetMeasure (class in mvpa.measures.base) CombinedMapper (class in mvpa.mappers.base) combiner (mvpa.algorithms.cvtranserror.CrossValidatedTransferError attribute) (mvpa.clfs.meta.CombinedClassifier attribute) (mvpa.featsel.base.CombinedFeatureSelection attribute) (mvpa.measures.base.FeaturewiseDatasetMeasure attribute) compatmask (mvpa.mappers.metric.DescreteMetric attribute) CompoundOneWayAnova (class in mvpa.measures.anova) compute() (mvpa.clfs.kernel.Kernel method) (mvpa.clfs.kernel.KernelConstant method) (mvpa.clfs.kernel.KernelExponential method) (mvpa.clfs.kernel.KernelLinear method) (mvpa.clfs.kernel.KernelMatern_3_2 method) (mvpa.clfs.kernel.KernelRationalQuadratic method) (mvpa.clfs.kernel.KernelSquaredExponential method) (mvpa.clfs.transerror.SummaryStatistics method) compute_gradient() (mvpa.clfs.kernel.Kernel method) compute_gradient_log_marginal_likelihood() (mvpa.clfs.gpr.GPR method) compute_gradient_log_marginal_likelihood_logscale() (mvpa.clfs.gpr.GPR method) compute_lml_gradient() (mvpa.clfs.kernel.Kernel method) (mvpa.clfs.kernel.KernelConstant method) (mvpa.clfs.kernel.KernelExponential method) (mvpa.clfs.kernel.KernelLinear method) (mvpa.clfs.kernel.KernelSquaredExponential method) compute_lml_gradient_logscale() (mvpa.clfs.kernel.Kernel method) (mvpa.clfs.kernel.KernelConstant method) (mvpa.clfs.kernel.KernelExponential method) (mvpa.clfs.kernel.KernelLinear method) (mvpa.clfs.kernel.KernelSquaredExponential method) compute_log_marginal_likelihood() (mvpa.clfs.blr.BLR method) (mvpa.clfs.gpr.GPR method) compute_M_H() (mvpa.measures.irelief.IterativeRelief method) (mvpa.measures.irelief.IterativeRelief_Devel method) config file ConfigManager (class in mvpa.base.config) configuration confusion (mvpa.clfs.transerror.ClassifierError attribute) ConfusionBasedError (class in mvpa.clfs.transerror) ConfusionMatrix (class in mvpa.clfs.transerror) ConvergenceError (class in mvpa.misc.exceptions) convertFeatureIds2FeatureMask() (mvpa.datasets.base.Dataset method) convertFeatureMask2FeatureIds() (mvpa.datasets.base.Dataset method) convertOutIds2InMask() (mvpa.mappers.mask.MaskMapper method) convertOutIds2OutMask() (mvpa.mappers.mask.MaskMapper method) coord (mvpa.atlases.base.Label attribute) coordT (mvpa.atlases.base.XMLBasedAtlas attribute) copy() (mvpa.datasets.base.Dataset method) CorrCoef (class in mvpa.measures.corrcoef) CorrStability (class in mvpa.measures.corrstability) count (mvpa.atlases.base.Label attribute) (mvpa.datasets.splitters.Splitter attribute) cross-validation, [1], [2], [3], [4] CrossValidatedTransferError (class in mvpa.algorithms.cvtranserror) CustomSplitter (class in mvpa.datasets.splitters)

D

data (mvpa.misc.io.base.DataReader attribute) data formats data splitting DataReader (class in mvpa.misc.io.base) Dataset dataset Dataset (class in mvpa.datasets.base) dataset attribute DatasetAttribute (class in mvpa.misc.attributes) DatasetError (class in mvpa.misc.exceptions) DatasetMeasure (class in mvpa.measures.base) datasetmethod() (in module mvpa.datasets.base) datasets (mvpa.datasets.meta.MetaDataset attribute) Debian, [1] debug, [1] Decoding default (mvpa.misc.param.Parameter attribute) defineFeatureGroups() (mvpa.datasets.base.Dataset method) DegenerateInputError (class in mvpa.clfs.base) degree (mvpa.clfs.libsvmc.svmc.svm_parameter attribute) delete_double() (in module mvpa.clfs.libsvmc.svmc) delete_int() (in module mvpa.clfs.libsvmc.svmc) DenseArrayMapper (class in mvpa.mappers.array) descr (mvpa.misc.state.ClassWithCollections attribute)

DescreteMetric (class in mvpa.mappers.metric) design2labels() (in module mvpa.misc.io.base) detrend() (in module mvpa.datasets.miscfx_sp) (mvpa.datasets.base.Dataset method) detrending development development snapshot disable() (mvpa.misc.state.StateCollection method) discardOut() (mvpa.mappers.mask.MaskMapper method) dissimilarity matrix distance (mvpa.atlases.base.ReferencesAtlas attribute) DistPValue (class in mvpa.misc.transformers) doc() (mvpa.misc.param.Parameter method) double_getitem() (in module mvpa.clfs.libsvmc.svmc) double_setitem() (in module mvpa.clfs.libsvmc.svmc) doubleGammaHRF() (in module mvpa.misc.fx) doubleppcarray2numpy_array() (in module mvpa.clfs.libsvmc.svmc) DSMatrix (class in mvpa.misc.stats) DSMDatasetMeasure (class in mvpa.measures.ds) dt (mvpa.datasets.channel.ChannelDataset attribute) (mvpa.datasets.nifti.NiftiDataset attribute) (mvpa.misc.io.eepbin.EEPBin attribute) dumbFeatureBinaryDataset() (in module mvpa.misc.data_generators) dumbFeatureDataset() (in module mvpa.misc.data_generators) dump() (mvpa.misc.io.hamster.Hamster method) durations (mvpa.misc.fsl.base.FslEV3 attribute)

E

EEPBin (class in mvpa.misc.io.eepbin) EEPDataset (class in mvpa.datasets.eep) ElementSelector (class in mvpa.featsel.helpers) elementsize (mvpa.mappers.metric.DescreteMetric attribute) enable() (mvpa.misc.attributes.StateVariable method) (mvpa.misc.state.StateCollection method) enabled (mvpa.misc.state.StateCollection attribute) ENET (class in mvpa.clfs.enet) ENETWeights (class in mvpa.clfs.enet) enhancedDocString() (in module mvpa.base.dochelpers) environment variable MVPA_DEBUG, [1], [2] MVPA_DEBUG_METRICS MVPA_DEBUG_WTF MVPA_EXAMPLES_INTERACTIVE MVPA_MATPLOTLIB_BACKEND MVPA_QUICKTEST MVPA_SEED MVPA_SVM_BACKEND MVPA_TESTS_LABILE, [1] MVPA_TESTS_QUICK, [1] MVPA_VERBOSE MVPA_VERBOSE_OUTPUT MVPA_WARNINGS_BT MVPA_WARNINGS_COUNT, [1] MVPA_WARNINGS_SUPPRESS Epoch eps (mvpa.clfs.libsvmc.svmc.svm_parameter attribute) equalDefault (mvpa.misc.param.Parameter attribute) ERNiftiDataset (class in mvpa.datasets.nifti)

error (mvpa.clfs.transerror.ConfusionMatrix attribute) (mvpa.clfs.transerror.RegressionStatistics attribute) (mvpa.clfs.transerror.SummaryStatistics attribute) error() (in module mvpa.base) errorfx (mvpa.clfs.transerror.TransferError attribute) escapeXML() (in module mvpa.base.report) Event (class in mvpa.misc.support) event-related fMRI EventDataset (class in mvpa.datasets.event) example Example example fMRI dataset examples exists() (in module mvpa.base.externals) extend_args() (in module mvpa.clfs.libsmlrc.ctypes_helper) extent (mvpa.atlases.base.XMLBasedAtlas attribute)

F

F-score FailedToPredictError (class in mvpa.clfs.base) FailedToTrainError (class in mvpa.clfs.base) Feature feature, [1] feature selection, [1], [2], [3] feature_ids (mvpa.measures.base.Sensitivity attribute) feature_selection (mvpa.clfs.meta.FeatureSelectionClassifier attribute) feature_selections (mvpa.featsel.base.CombinedFeatureSelection attribute) (mvpa.featsel.base.FeatureSelectionPipeline attribute) FeatureAttribute (class in mvpa.misc.attributes) FeatureSelection (class in mvpa.featsel.base) FeatureSelectionClassifier (class in mvpa.clfs.meta) FeatureSelectionClassifierSensitivityAnalyzer (class in mvpa.measures.base) FeatureSelectionPipeline (class in mvpa.featsel.base) FeaturewiseDatasetMeasure (class in mvpa.measures.base) Fedora felements (mvpa.featsel.helpers.FractionTailSelector attribute) figure() (mvpa.base.report.Report method) figures() (mvpa.base.report.Report method) filter_coord (mvpa.mappers.metric.DescreteMetric attribute) find() (mvpa.atlases.base.LabelsLevel method) (mvpa.atlases.fsl.FSLProbabilisticAtlas method)

FirstAxisMean() (in module mvpa.misc.transformers) FirstAxisSumNotZero() (in module mvpa.misc.transformers) fit() (mvpa.clfs.stats.AdaptiveNullDist method) (mvpa.clfs.stats.FixedNullDist method) (mvpa.clfs.stats.MCNullDist method) (mvpa.clfs.stats.Nonparametric static method) (mvpa.clfs.stats.NullDist method) FixedErrorThresholdStopCrit (class in mvpa.featsel.helpers) FixedNElementTailSelector (class in mvpa.featsel.helpers) FixedNullDist (class in mvpa.clfs.stats) flowbreak() (mvpa.base.report.Report method) fMRI forward mapping forward() (mvpa.mappers.base.ChainMapper method) (mvpa.mappers.base.CombinedMapper method) (mvpa.mappers.base.Mapper method) (mvpa.mappers.base.ProjectionMapper method) (mvpa.mappers.boxcar.BoxcarMapper method) (mvpa.mappers.lle.LLEMapper method) (mvpa.mappers.mask.MaskMapper method) (mvpa.mappers.samplegroup.SampleGroupMapper method) (mvpa.mappers.som.SimpleSOMMapper method) FractionTailSelector (class in mvpa.featsel.helpers) free software free_sv (mvpa.clfs.libsvmc.svmc.svm_model attribute) FSL, [1] FSLAtlas (class in mvpa.atlases.fsl) FslEV3 (class in mvpa.misc.fsl.base) FslGLMDesign (class in mvpa.misc.fsl.base) FSLLabelsAtlas (class in mvpa.atlases.fsl) FSLProbabilisticAtlas (class in mvpa.atlases.fsl) funcdata (mvpa.misc.fsl.melodic.MelodicResults attribute)

G

gamma (mvpa.clfs.libsvmc.svmc.svm_parameter attribute) Gaussian process regression generateFromXML() (mvpa.atlases.base.Label static method) (mvpa.atlases.base.LabelsLevel static method) (mvpa.atlases.base.Level static method) (mvpa.atlases.base.ReferencesLevel static method) get() (mvpa.base.config.ConfigManager method) (mvpa.misc.state.Collection method) get_argtypes() (in module mvpa.clfs.libsmlrc.ctypes_helper) getAsDType() (mvpa.base.config.ConfigManager method) getboolean() (mvpa.base.config.ConfigManager method) getBreakPoints() (in module mvpa.misc.support) getData() (mvpa.misc.io.base.DataReader method) getDt() (mvpa.datasets.nifti.NiftiDataset method) getEV() (mvpa.misc.fsl.base.FslEV3 method) getFullMatrix() (mvpa.misc.stats.DSMatrix method) getInId() (mvpa.mappers.base.Mapper method) (mvpa.mappers.mask.MaskMapper method) (mvpa.mappers.som.SimpleSOMMapper method) getInIds() (mvpa.mappers.mask.MaskMapper method) getInSize() (mvpa.mappers.base.ChainMapper method) (mvpa.mappers.base.CombinedMapper method) (mvpa.mappers.base.Mapper method) (mvpa.mappers.base.ProjectionMapper method) (mvpa.mappers.boxcar.BoxcarMapper method) (mvpa.mappers.lle.LLEMapper method) (mvpa.mappers.mask.MaskMapper method) (mvpa.mappers.samplegroup.SampleGroupMapper method) (mvpa.mappers.som.SimpleSOMMapper method) getLabels_map() (mvpa.clfs.transerror.ConfusionMatrix method) getLabelsMap() (mvpa.datasets.base.Dataset method) getMajorityVote() (mvpa.clfs.knn.kNN method) getMap() (mvpa.atlases.fsl.FSLProbabilisticAtlas method) getMaps() (mvpa.atlases.fsl.FSLProbabilisticAtlas method) getMask() (mvpa.mappers.mask.MaskMapper method) getMetric() (mvpa.mappers.base.Mapper method) (mvpa.misc.stats.DSMatrix method) getMVPattern() (in module mvpa.misc.data_generators) getNColumns() (mvpa.misc.io.base.ColumnData method) getNeighbor() (mvpa.mappers.base.ChainMapper method) (mvpa.mappers.base.CombinedMapper method) (mvpa.mappers.base.Mapper method) (mvpa.mappers.metric.Metric method) getNeighborIn() (mvpa.mappers.base.Mapper method) getNeighbors() (mvpa.mappers.base.Mapper method) (mvpa.mappers.metric.DescreteMetric method) (mvpa.mappers.metric.Metric method) getNEVs() (mvpa.misc.fsl.base.FslEV3 method)

getNFeatures() (mvpa.datasets.base.Dataset method) (mvpa.datasets.meta.MetaDataset method) getNiftiData() (in module mvpa.datasets.nifti) getNiftiFromAnySource() (in module mvpa.datasets.nifti) getNRows() (mvpa.misc.io.base.ColumnData method) getNSamples() (mvpa.datasets.base.Dataset method) (mvpa.datasets.meta.MetaDataset method) (mvpa.misc.io.base.SampleAttributes method) getOutId() (mvpa.mappers.mask.MaskMapper method) getOutSize() (mvpa.mappers.base.ChainMapper method) (mvpa.mappers.base.CombinedMapper method) (mvpa.mappers.base.Mapper method) (mvpa.mappers.base.ProjectionMapper method) (mvpa.mappers.boxcar.BoxcarMapper method) (mvpa.mappers.lle.LLEMapper method) (mvpa.mappers.mask.MaskMapper method) (mvpa.mappers.samplegroup.SampleGroupMapper method) (mvpa.mappers.som.SimpleSOMMapper method) getPropsAsDict() (mvpa.misc.io.base.DataReader method) getRandomSamples() (mvpa.datasets.base.Dataset method) (mvpa.datasets.meta.MetaDataset method) getSamplesPerChunkLabel() (in module mvpa.datasets.miscfx) (mvpa.datasets.base.Dataset method) getSensitivityAnalyzer() (mvpa.clfs.base.Classifier method) (mvpa.clfs.enet.ENET method) (mvpa.clfs.gpr.GPR method) (mvpa.clfs.lars.LARS method) (mvpa.clfs.meta.BoostedClassifier method) (mvpa.clfs.meta.FeatureSelectionClassifier method) (mvpa.clfs.meta.MappedClassifier method) (mvpa.clfs.meta.ProxyClassifier method) (mvpa.clfs.meta.SplitClassifier method) (mvpa.clfs.smlr.SMLR method) getTriangle() (mvpa.misc.stats.DSMatrix method) getUniqueLengthNCombinations() (in module mvpa.misc.support) getVectorForm() (mvpa.misc.stats.DSMatrix method) getWeightedVote() (mvpa.clfs.knn.kNN method) Git, [1] Git repository GLM (class in mvpa.measures.glm) GLMNET_C (class in mvpa.clfs.glmnet) GLMNET_R (class in mvpa.clfs.glmnet) GLMNETWeights (class in mvpa.clfs.glmnet) GNB (class in mvpa.clfs.gnb) GPR, [1] (class in mvpa.clfs.gpr) GPRLinearWeights (class in mvpa.clfs.gpr) gradient() (mvpa.clfs.kernel.KernelExponential method) (mvpa.clfs.kernel.KernelMatern_3_2 method) (mvpa.clfs.kernel.KernelRationalQuadratic method) GrandMean() (in module mvpa.misc.transformers) group_kwargs() (in module mvpa.misc.args)

H

HalfSplitter (class in mvpa.datasets.splitters) Hamster (class in mvpa.misc.io.hamster) handleDocString() (in module mvpa.base.dochelpers) handlers (mvpa.base.verbosity.Logger attribute) harvest_attribs (mvpa.misc.state.Harvestable attribute) Harvestable (class in mvpa.misc.state) Harvester (class in mvpa.misc.support)

HarvesterCall (class in mvpa.misc.support) hasunique (mvpa.misc.attributes.AttributeWithUnique attribute) header_def (mvpa.misc.fsl.base.McFlirtParams attribute) history hlcuster Hyperalignment (class in mvpa.algorithms.hyperalignment)

I

I (mvpa.datasets.base.Dataset attribute) ic (mvpa.misc.fsl.melodic.MelodicResults attribute) ICAMapper (class in mvpa.mappers.ica) icastats (mvpa.misc.fsl.melodic.MelodicResults attribute) Identity() (in module mvpa.misc.transformers) idhash (mvpa.datasets.base.Dataset attribute) idhash() (in module mvpa.misc.support) idsbychunks() (mvpa.datasets.base.Dataset method) idsbylabels() (mvpa.datasets.base.Dataset method) idsonboundaries() (mvpa.datasets.base.Dataset method) IFS (class in mvpa.featsel.ifs) incremental feature search indent (mvpa.base.verbosity.LevelLogger attribute) indentDoc() (in module mvpa.misc.support) index (mvpa.atlases.base.Label attribute) (mvpa.atlases.base.LabelsLevel attribute) index() (mvpa.datasets.base.Dataset method) indexes (mvpa.atlases.base.ReferencesLevel attribute) installation int_getitem() (in module mvpa.clfs.libsvmc.svmc) int_setitem() (in module mvpa.clfs.libsvmc.svmc) intensities (mvpa.misc.fsl.base.FslEV3 attribute) internals (mvpa.clfs.warehouse.Warehouse attribute)

introduction InvalidHyperparameterError (class in mvpa.misc.exceptions) invariant features inverseCmap() (in module mvpa.misc.plot.base) IPython isActive() (mvpa.misc.state.StateCollection method) isDefault (mvpa.misc.param.Parameter attribute) isEnabled (mvpa.misc.attributes.StateVariable attribute) isEnabled() (mvpa.misc.state.StateCollection method) isInVolume() (in module mvpa.misc.support) isKnown() (mvpa.misc.state.Collection method) isSet (mvpa.misc.attributes.CollectableAttribute attribute) isSet() (mvpa.misc.state.Collection method) isSorted() (in module mvpa.misc.support) isTrained() (mvpa.clfs.base.Classifier method) isValidInId() (mvpa.mappers.base.Mapper method) (mvpa.mappers.boxcar.BoxcarMapper method) (mvpa.mappers.mask.MaskMapper method) isValidOutId() (mvpa.mappers.base.Mapper method) (mvpa.mappers.boxcar.BoxcarMapper method) (mvpa.mappers.som.SimpleSOMMapper method) items (mvpa.clfs.warehouse.Warehouse attribute) (mvpa.misc.state.Collection attribute) IterativeRelief (class in mvpa.measures.irelief) IterativeRelief_Devel (class in mvpa.measures.irelief) IterativeReliefOnline (class in mvpa.measures.irelief) IterativeReliefOnline_Devel (class in mvpa.measures.irelief)

K

K (mvpa.mappers.som.SimpleSOMMapper attribute) k() (mvpa.measures.irelief.IterativeRelief method) k-nearest-neighbour Kernel (class in mvpa.clfs.kernel) kernel (mvpa.clfs.gpr.GPR attribute) kernel_type (mvpa.clfs.libsvmc.svmc.svm_parameter attribute) KernelConstant (class in mvpa.clfs.kernel) KernelExponential (class in mvpa.clfs.kernel)

KernelLinear (class in mvpa.clfs.kernel) KernelMatern_3_2 (class in mvpa.clfs.kernel) KernelMatern_5_2 (class in mvpa.clfs.kernel) KernelParameter (class in mvpa.misc.param) KernelRationalQuadratic (class in mvpa.clfs.kernel) KernelSquaredExponential (class in mvpa.clfs.kernel) kNN (class in mvpa.clfs.knn)

L

l (mvpa.clfs.libsvmc.svmc.svm_model attribute) (mvpa.clfs.libsvmc.svmc.svm_problem attribute) L (mvpa.datasets.base.Dataset attribute) L1Normed() (in module mvpa.misc.transformers) L2Normed() (in module mvpa.misc.transformers) Label (class in mvpa.atlases.base) label (mvpa.clfs.libsvmc.svmc.svm_model attribute) labelPoint() (mvpa.atlases.base.XMLBasedAtlas method) labels (mvpa.atlases.base.LabelsLevel attribute) (mvpa.clfs.transerror.ClassifierError attribute) (mvpa.clfs.transerror.ConfusionMatrix attribute) (mvpa.datasets.base.Dataset attribute) labels2chunks() (in module mvpa.misc.io.base) labels_map (mvpa.clfs.transerror.ConfusionMatrix attribute) (mvpa.datasets.base.Dataset attribute) LabelsAtlas (class in mvpa.atlases.base) LabelsLevel (class in mvpa.atlases.base) labelVoxel() (mvpa.atlases.base.LabelsAtlas method) (mvpa.atlases.base.ReferencesAtlas method) (mvpa.atlases.fsl.FSLProbabilisticAtlas method) LARS (class in mvpa.clfs.lars) LARSWeights (class in mvpa.clfs.lars) LearnerError (class in mvpa.clfs.base) least angle regression leastSqFit() (in module mvpa.misc.fx) leave-one-out length_scale (mvpa.clfs.kernel.KernelSquaredExponential attribute)

Level (class in mvpa.atlases.base) level (mvpa.base.verbosity.LevelLogger attribute) LevelLogger (class in mvpa.base.verbosity) levels_dict (mvpa.atlases.base.XMLBasedAtlas attribute) levelsListing() (mvpa.atlases.base.ReferencesAtlas method) (mvpa.atlases.base.XMLBasedAtlas method) levelType (mvpa.atlases.base.Level attribute) lfprev (mvpa.base.verbosity.Logger attribute) LIBSVM, [1] license linear1d_gaussian_noise() (in module mvpa.misc.data_generators) linear_awgn() (in module mvpa.misc.data_generators) LinearSVMWeights (class in mvpa.clfs.libsvmc.sens) (class in mvpa.clfs.sg.sens) listing (mvpa.misc.state.Collection attribute) listing() (mvpa.clfs.warehouse.Warehouse method) LLEMapper (class in mvpa.mappers.lle) loadAtlas() (mvpa.atlases.base.XMLBasedAtlas method) locations() (mvpa.misc.io.base.SensorLocations method) Logger (class in mvpa.base.verbosity) logistic regression

M

MacOS X, [1], [2] mahalanobisDistance() (in module mvpa.clfs.distance) makeFlobs() (in module mvpa.misc.fsl.flobs) manhattenDistance() (in module mvpa.clfs.distance) map2Nifti() (mvpa.datasets.nifti.ERNiftiDataset method) (mvpa.datasets.nifti.NiftiDataset method) mapForward() (mvpa.datasets.mapped.MappedDataset method) MapOverlap (class in mvpa.misc.support) MappedClassifier (class in mvpa.clfs.meta) MappedClassifierSensitivityAnalyzer (class in mvpa.measures.base) MappedDataset (class in mvpa.datasets.mapped) mapper, [1], [2] Mapper (class in mvpa.mappers.base) mapper (mvpa.clfs.meta.MappedClassifier attribute) (mvpa.datasets.mapped.MappedDataset attribute) mapReverse() (mvpa.datasets.mapped.MappedDataset method) (mvpa.datasets.meta.MetaDataset method) mapSelfReverse() (mvpa.datasets.mapped.MappedDataset method) mask (mvpa.mappers.mask.MaskMapper attribute) maskclf (mvpa.clfs.meta.FeatureSelectionClassifier attribute) MaskedDataset (class in mvpa.datasets.masked) MaskMapper (class in mvpa.mappers.mask) Matlab matplotlib matrices (mvpa.clfs.transerror.ConfusionMatrix attribute) matrix (mvpa.clfs.transerror.ConfusionMatrix attribute) max_log_marginal_likelihood() (mvpa.clfs.model_selector.ModelSelector method) maxcount (mvpa.base.WarningLog attribute) MaximalVote (class in mvpa.clfs.meta) McFlirtParams (class in mvpa.misc.fsl.base) MCNullDist (class in mvpa.clfs.stats) MeanMismatchErrorFx (class in mvpa.misc.errorfx) meanPowerFx() (in module mvpa.misc.errorfx) MeanPrediction (class in mvpa.clfs.meta) means (mvpa.clfs.gnb.GNB attribute) measure, [1], [2], [3], [4] MelodicResults (class in mvpa.misc.fsl.melodic) meta measures MetaDataset (class in mvpa.datasets.meta) Metric (class in mvpa.mappers.metric) metric (mvpa.mappers.base.Mapper attribute) misc MNI2Tal_Lancaster07FSL() (in module mvpa.atlases.transformation) MNI2Tal_Lancaster07pooled() (in module mvpa.atlases.transformation) MNI2Tal_MatthewBrett (class in mvpa.atlases.transformation) MNI2Tal_MeyerLindenberg98() (in module mvpa.atlases.transformation) MNI2Tal_YOHflirt() (in module mvpa.atlases.transformation) mode (mvpa.featsel.helpers.ElementSelector attribute) model (mvpa.clfs.libsvmc.svm.SVM attribute) model selection ModelSelector (class in mvpa.clfs.model_selector) modular architecture monte-carlo motion correction MulticlassClassifier (class in mvpa.clfs.meta) multipleChunks() (in module mvpa.misc.data_generators) MultiStopCrit (class in mvpa.featsel.helpers) MVPA, [1] mvpa (module) MVPA toolbox for Matlab, [1] mvpa.algorithms.cvtranserror (module) mvpa.algorithms.hyperalignment (module) mvpa.atlases.base (module) mvpa.atlases.fsl (module) mvpa.atlases.transformation (module) mvpa.atlases.warehouse (module) mvpa.base (module) mvpa.base.config (module) mvpa.base.dochelpers (module) mvpa.base.externals (module) mvpa.base.info (module) mvpa.base.report (module) mvpa.base.report_dummy (module) mvpa.base.verbosity (module) mvpa.clfs.base (module) mvpa.clfs.blr (module) mvpa.clfs.distance (module) mvpa.clfs.enet (module) mvpa.clfs.glmnet (module) mvpa.clfs.gnb (module) mvpa.clfs.gpr (module) mvpa.clfs.kernel (module) mvpa.clfs.knn (module) mvpa.clfs.lars (module) mvpa.clfs.libsmlrc (module) mvpa.clfs.libsmlrc.ctypes_helper (module) mvpa.clfs.libsvmc.sens (module) mvpa.clfs.libsvmc.svm (module) mvpa.clfs.libsvmc.svmc (module) mvpa.clfs.meta (module) mvpa.clfs.model_selector (module)

mvpa.clfs.plr (module) mvpa.clfs.ridge (module) mvpa.clfs.sg.sens (module) mvpa.clfs.sg.svm (module) mvpa.clfs.smlr (module) mvpa.clfs.stats (module) mvpa.clfs.transerror (module) mvpa.clfs.warehouse (module) mvpa.datasets.base (module) mvpa.datasets.channel (module) mvpa.datasets.eep (module) mvpa.datasets.event (module) mvpa.datasets.mapped (module) mvpa.datasets.masked (module) mvpa.datasets.meta (module) mvpa.datasets.miscfx (module) mvpa.datasets.miscfx_sp (module) mvpa.datasets.nifti (module) mvpa.datasets.splitters (module) mvpa.featsel.base (module) mvpa.featsel.helpers (module) mvpa.featsel.ifs (module) mvpa.featsel.rfe (module) mvpa.mappers.array (module) mvpa.mappers.base (module) mvpa.mappers.boxcar (module) mvpa.mappers.ica (module) mvpa.mappers.lle (module) mvpa.mappers.mask (module) mvpa.mappers.metric (module) mvpa.mappers.pca (module) mvpa.mappers.procrustean (module) mvpa.mappers.samplegroup (module) mvpa.mappers.som (module) mvpa.mappers.svd (module) mvpa.mappers.wavelet (module) mvpa.mappers.zscore (module) mvpa.measures.anova (module) mvpa.measures.base (module) mvpa.measures.corrcoef (module) mvpa.measures.corrstability (module) mvpa.measures.ds (module) mvpa.measures.glm (module) mvpa.measures.irelief (module) mvpa.measures.noiseperturbation (module) mvpa.measures.pls (module) mvpa.measures.searchlight (module) mvpa.measures.splitmeasure (module) mvpa.misc.args (module) mvpa.misc.attributes (module) mvpa.misc.bv.base (module) mvpa.misc.cmdline (module) mvpa.misc.data_generators (module) mvpa.misc.errorfx (module) mvpa.misc.exceptions (module) mvpa.misc.fsl.base (module) mvpa.misc.fsl.flobs (module) mvpa.misc.fsl.melodic (module) mvpa.misc.fx (module) mvpa.misc.io.base (module) mvpa.misc.io.eepbin (module) mvpa.misc.io.hamster (module) mvpa.misc.io.meg (module) mvpa.misc.param (module) mvpa.misc.plot.base (module) mvpa.misc.plot.erp (module) mvpa.misc.plot.mri (module) mvpa.misc.plot.topo (module) mvpa.misc.state (module) mvpa.misc.stats (module) mvpa.misc.support (module) mvpa.misc.transformers (module) mvpa.misc.vproperty (module) MVPA_DEBUG, [1], [2] MVPA_DEBUG_METRICS MVPA_DEBUG_WTF MVPA_EXAMPLES_INTERACTIVE MVPA_MATPLOTLIB_BACKEND MVPA_QUICKTEST MVPA_SEED MVPA_SVM_BACKEND MVPA_TESTS_LABILE, [1] MVPA_TESTS_QUICK, [1] MVPA_VERBOSE MVPA_VERBOSE_OUTPUT MVPA_WARNINGS_BT MVPA_WARNINGS_COUNT, [1] MVPA_WARNINGS_SUPPRESS

N

name (mvpa.misc.attributes.CollectableAttribute attribute) (mvpa.misc.state.Collection attribute) names (mvpa.misc.state.Collection attribute) nanmean() (in module mvpa.clfs.stats) NBackHistoryStopCrit (class in mvpa.featsel.helpers) nchannels (mvpa.misc.io.eepbin.EEPBin attribute) ncolumns (mvpa.misc.io.base.ColumnData attribute) nelements (mvpa.featsel.helpers.FixedNElementTailSelector attribute) nevs (mvpa.misc.fsl.base.FslEV3 attribute) new_double() (in module mvpa.clfs.libsvmc.svmc) new_int() (in module mvpa.clfs.libsvmc.svmc) nfeatures (mvpa.datasets.base.Dataset attribute) (mvpa.datasets.meta.MetaDataset attribute) (mvpa.mappers.base.Mapper attribute) NFoldSplitter (class in mvpa.datasets.splitters) NGroupSplitter (class in mvpa.datasets.splitters) nic (mvpa.misc.fsl.melodic.MelodicResults attribute) NIfTI, [1] NiftiDataset (class in mvpa.datasets.nifti) niftihdr (mvpa.datasets.nifti.ERNiftiDataset attribute) (mvpa.datasets.nifti.NiftiDataset attribute) Nlevels (mvpa.atlases.base.PyMVPAAtlas attribute) node (mvpa.mappers.lle.LLEMapper attribute) noise perturbation

NoisePerturbationSensitivity (class in mvpa.measures.noiseperturbation) noisy_2d_fx() (in module mvpa.misc.data_generators) NoneSplitter (class in mvpa.datasets.splitters) Nonparametric (class in mvpa.clfs.stats) normalFeatureDataset() (in module mvpa.misc.data_generators) normalFeatureDataset__() (in module mvpa.misc.data_generators) nr_class (mvpa.clfs.libsvmc.svmc.svm_model attribute) nr_weight (mvpa.clfs.libsvmc.svmc.svm_parameter attribute) nrows (mvpa.misc.io.base.ColumnData attribute) nsamples (mvpa.datasets.base.Dataset attribute) (mvpa.datasets.meta.MetaDataset attribute) (mvpa.misc.io.base.SampleAttributes attribute) (mvpa.misc.io.eepbin.EEPBin attribute) NStepsStopCrit (class in mvpa.featsel.helpers) nSV (mvpa.clfs.libsvmc.svmc.svm_model attribute) ntimepoints (mvpa.misc.io.eepbin.EEPBin attribute) nu (mvpa.clfs.libsvmc.svmc.svm_parameter attribute) null_dist (mvpa.clfs.transerror.TransferError attribute) (mvpa.measures.base.DatasetMeasure attribute) null_prob (mvpa.measures.base.DatasetMeasure attribute) null_t (mvpa.measures.base.DatasetMeasure attribute) NullDist (class in mvpa.clfs.stats) NumPy

O

O (mvpa.datasets.mapped.MappedDataset attribute) OddEvenSplitter (class in mvpa.datasets.splitters) OnceLogger (class in mvpa.base.verbosity) OneMinus() (in module mvpa.misc.transformers) oneMinusCorrelation() (in module mvpa.clfs.distance) OneWayAnova (class in mvpa.measures.anova) onsets (mvpa.misc.fsl.base.FslEV3 attribute) OpenSUSE, [1]

optimization OptionGroups (class in mvpa.misc.cmdline) Options (class in mvpa.misc.cmdline) origids (mvpa.datasets.base.Dataset attribute) origin (mvpa.atlases.base.XMLBasedAtlas attribute) OverAxis (class in mvpa.misc.transformers) owner (mvpa.misc.state.Collection attribute)

P

p (mvpa.clfs.libsvmc.svmc.svm_parameter attribute) p() (mvpa.clfs.stats.NullDist method) param (mvpa.clfs.libsvmc.svmc.svm_model attribute) Parameter (class in mvpa.misc.param) ParameterCollection (class in mvpa.misc.state) parse() (mvpa.misc.support.SmartVersion method) path (mvpa.misc.fsl.melodic.MelodicResults attribute) PCAMapper (class in mvpa.mappers.pca) penalized logistic regression percentCorrect (mvpa.clfs.transerror.ConfusionMatrix attribute) permutation permuteLabels() (mvpa.datasets.base.Dataset method) (mvpa.datasets.meta.MetaDataset method) plot() (mvpa.clfs.transerror.ConfusionMatrix method) (mvpa.clfs.transerror.ROCCurve method) (mvpa.clfs.transerror.RegressionStatistics method) (mvpa.datasets.miscfx.SequenceStats method) (mvpa.misc.fsl.base.FslGLMDesign method) (mvpa.misc.fsl.base.McFlirtParams method) plotBars() (in module mvpa.misc.plot.base) plotDatasetChunks() (in module mvpa.misc.plot.base) plotERP() (in module mvpa.misc.plot.erp) plotERPs() (in module mvpa.misc.plot.erp) plotErrLine() (in module mvpa.misc.plot.base) plotFeatureHist() (in module mvpa.misc.plot.base) plotHeadOutline() (in module mvpa.misc.plot.topo) plotHeadTopography() (in module mvpa.misc.plot.topo) plotMRI() (in module mvpa.misc.plot.mri) plotSamplesDistance() (in module mvpa.misc.plot.base) plotting plotting example PLR (class in mvpa.clfs.plr)

PLS (class in mvpa.measures.pls) pnorm_w_python() (in module mvpa.clfs.distance) predict() (mvpa.clfs.base.Classifier method) PredictionsCombiner (class in mvpa.clfs.meta) print_registered() (mvpa.base.verbosity.SetLogger method) printsetid (mvpa.base.verbosity.SetLogger attribute) priors (mvpa.clfs.gnb.GNB attribute) probA (mvpa.clfs.libsvmc.svmc.svm_model attribute) probability (mvpa.clfs.libsvmc.svmc.svm_parameter attribute) probB (mvpa.clfs.libsvmc.svmc.svm_model attribute) process_args() (in module mvpa.clfs.libsmlrc.ctypes_helper) processing object, [1] Processing object ProcrusteanMapper (class in mvpa.mappers.procrustean) progress tracking proj (mvpa.mappers.base.ProjectionMapper attribute) ProjectionMapper (class in mvpa.mappers.base) props (mvpa.misc.io.base.DataReader attribute) ProxyClassifier (class in mvpa.clfs.meta) ProxyClassifierSensitivityAnalyzer (class in mvpa.measures.base) pureMultivariateSignal() (in module mvpa.misc.data_generators) PyMatlab PyMVPA poster PyMVPAAtlas (class in mvpa.atlases.base) PyNIfTI

R

R random number generation RangeElementSelector (class in mvpa.featsel.helpers) RankOrder() (in module mvpa.misc.transformers) read_fsl_design() (in module mvpa.misc.fsl.base) rebuildSamples() (mvpa.datasets.meta.MetaDataset method) recommended software recon (mvpa.mappers.base.ProjectionMapper attribute) recursive feature selection redirecting output references ReferencesAtlas (class in mvpa.atlases.base) ReferencesLevel (class in mvpa.atlases.base) register() (mvpa.base.verbosity.SetLogger method) registered (mvpa.base.verbosity.SetLogger attribute) (mvpa.misc.io.hamster.Hamster attribute) RegressionStatistics (class in mvpa.clfs.transerror) RelativeRMSErrorFx (class in mvpa.misc.errorfx) releases reload() (mvpa.base.config.ConfigManager method) relvar_per_ic (mvpa.misc.fsl.melodic.MelodicResults attribute) remove() (mvpa.misc.state.Collection method) removeInvariantFeatures() (in module mvpa.datasets.miscfx) (mvpa.datasets.base.Dataset method) Report (class in mvpa.base.report) (class in mvpa.base.report_dummy)

repredict() (mvpa.clfs.base.Classifier method) required software resample() (mvpa.datasets.channel.ChannelDataset method) reset() (mvpa.clfs.kernel.Kernel method) (mvpa.clfs.kernel.KernelLinear method) (mvpa.clfs.kernel.KernelSquaredExponential method) (mvpa.clfs.transerror.SummaryStatistics method) (mvpa.misc.attributes.AttributeWithUnique method) (mvpa.misc.attributes.CollectableAttribute method) (mvpa.misc.attributes.StateVariable method) (mvpa.misc.state.ClassWithCollections method) (mvpa.misc.state.Collection method) resetvalue() (mvpa.misc.param.Parameter method) (mvpa.misc.state.ParameterCollection method) retrain() (mvpa.clfs.base.Classifier method) reuseAbsolutePath() (in module mvpa.misc.support) reverse mapping reverse() (mvpa.mappers.base.ChainMapper method) (mvpa.mappers.base.CombinedMapper method) (mvpa.mappers.base.Mapper method) (mvpa.mappers.base.ProjectionMapper method) (mvpa.mappers.boxcar.BoxcarMapper method) (mvpa.mappers.lle.LLEMapper method) (mvpa.mappers.mask.MaskMapper method) (mvpa.mappers.samplegroup.SampleGroupMapper method) (mvpa.mappers.som.SimpleSOMMapper method) ReverseRankOrder() (in module mvpa.misc.transformers) review RFE (class in mvpa.featsel.rfe) RFEHistory2maps() (in module mvpa.misc.support) rho (mvpa.clfs.libsvmc.svmc.svm_model attribute) ridge regression RidgeReg (class in mvpa.clfs.ridge) RMSErrorFx (class in mvpa.misc.errorfx) RNG ROCCurve (class in mvpa.clfs.transerror) ROCs (mvpa.clfs.transerror.ROCCurve attribute) rootMeanPowerFx() (in module mvpa.misc.errorfx) RPy, [1] rstUnderline() (in module mvpa.base.dochelpers)

S

S (mvpa.datasets.base.Dataset attribute) sample, [1] Sample sample attribute SampleAttribute (class in mvpa.misc.attributes) SampleAttributes (class in mvpa.misc.io.base) SampleAttributesCollection (class in mvpa.misc.state) SampleGroupMapper (class in mvpa.mappers.samplegroup) samples (mvpa.datasets.base.Dataset attribute) samples_original (mvpa.datasets.mapped.MappedDataset attribute) samplesperchunk (mvpa.datasets.base.Dataset attribute) samplesperlabel (mvpa.datasets.base.Dataset attribute) samplingrate (mvpa.datasets.channel.ChannelDataset attribute) (mvpa.datasets.nifti.NiftiDataset attribute) save() (mvpa.base.config.ConfigManager method) (mvpa.base.report.Report method) SciPy searchlight, [1], [2] Searchlight (class in mvpa.measures.searchlight) SecondAxisMaxOfAbs() (in module mvpa.misc.transformers) SecondAxisMean() (in module mvpa.misc.transformers) SecondAxisSumOfAbs() (in module mvpa.misc.transformers) seed() (in module mvpa) select() (mvpa.datasets.base.Dataset method) selectFeatures() (mvpa.datasets.base.Dataset method) (mvpa.datasets.mapped.MappedDataset method) (mvpa.datasets.meta.MetaDataset method) selectFeaturesByMask() (mvpa.datasets.masked.MaskedDataset method) selectOut() (mvpa.mappers.base.ChainMapper method) (mvpa.mappers.base.CombinedMapper method) (mvpa.mappers.base.Mapper method) (mvpa.mappers.base.ProjectionMapper method) (mvpa.mappers.boxcar.BoxcarMapper method) (mvpa.mappers.mask.MaskMapper method) (mvpa.mappers.samplegroup.SampleGroupMapper method) (mvpa.mappers.som.SimpleSOMMapper method) (mvpa.mappers.svd.SVDMapper method) selectSamples() (mvpa.datasets.base.Dataset method) (mvpa.datasets.meta.MetaDataset method) (mvpa.misc.io.base.ColumnData method) self-organizing map sensitivity, [1], [2], [3] Sensitivity (class in mvpa.measures.base) Sensitivity Map sensitivity_analyzer (mvpa.featsel.base.SensitivityBasedFeatureSelection attribute) SensitivityBasedFeatureSelection (class in mvpa.featsel.base) SensorLocations (class in mvpa.misc.io.base) SequenceStats (class in mvpa.datasets.miscfx) set_hyperparameters() (mvpa.clfs.blr.BLR method) (mvpa.clfs.gpr.GPR method) (mvpa.clfs.kernel.KernelConstant method) (mvpa.clfs.kernel.KernelExponential method) (mvpa.clfs.kernel.KernelLinear method) (mvpa.clfs.kernel.KernelMatern_3_2 method) (mvpa.clfs.kernel.KernelRationalQuadratic method) (mvpa.clfs.kernel.KernelSquaredExponential method) setActiveFromString() (mvpa.base.verbosity.SetLogger method) setCoordT() (mvpa.atlases.base.XMLBasedAtlas method) setDefault() (mvpa.misc.param.Parameter method) setDistance() (mvpa.atlases.base.ReferencesAtlas method) setLabels_map() (mvpa.clfs.transerror.ConfusionMatrix method) setLabelsMap() (mvpa.datasets.base.Dataset method) SetLogger (class in mvpa.base.verbosity) setMetric() (mvpa.mappers.base.Mapper method) setNPerLabel() (mvpa.datasets.splitters.Splitter method) setReferenceLevel() (mvpa.atlases.base.ReferencesAtlas method) sets (mvpa.clfs.transerror.SummaryStatistics attribute) setSamplesDType() (mvpa.datasets.base.Dataset method) (mvpa.datasets.meta.MetaDataset method) setTestDataset() (mvpa.clfs.meta.FeatureSelectionClassifier method) settings Shogun shrinking (mvpa.clfs.libsvmc.svmc.svm_parameter attribute) Sigma_p (mvpa.clfs.kernel.KernelLinear attribute) SimpleSOMMapper (class in mvpa.mappers.som) singleGammaHRF() (in module mvpa.misc.fx) singleOrPlural() (in module mvpa.base.dochelpers) sinModulated() (in module mvpa.misc.data_generators) SmartVersion (class in mvpa.misc.support) SMLR, [1] (class in mvpa.clfs.smlr) SMLRWeights (class in mvpa.clfs.smlr) smodes (mvpa.misc.fsl.melodic.MelodicResults attribute) solve() (mvpa.clfs.model_selector.ModelSelector method) SOM source (mvpa.atlases.base.PyMVPAAtlas attribute) (mvpa.atlases.fsl.FSLAtlas attribute) source package space (mvpa.atlases.base.PyMVPAAtlas attribute) spaceFlavor (mvpa.atlases.base.PyMVPAAtlas attribute) spaceT (mvpa.atlases.base.XMLBasedAtlas attribute)

SpaceTransformation (class in mvpa.atlases.transformation) sparse multinomial logistic regression Spatial Discrimination Map (SDM) split_kwargs() (in module mvpa.misc.args) splitcfg() (mvpa.datasets.splitters.Splitter method) SplitClassifier (class in mvpa.clfs.meta) splitDataset() (mvpa.datasets.splitters.Splitter method) SplitFeaturewiseDatasetMeasure (class in mvpa.measures.base) SplitFeaturewiseMeasure (class in mvpa.measures.splitmeasure) splitter Splitter (class in mvpa.datasets.splitters) splitter (mvpa.algorithms.cvtranserror.CrossValidatedTransferError attribute) (mvpa.clfs.meta.SplitClassifier attribute) splitting measures squared_euclidean_distance() (in module mvpa.clfs.distance) StateCollection (class in mvpa.misc.state) states StateVariable (class in mvpa.misc.attributes) StaticDatasetMeasure (class in mvpa.measures.base) Statistical Discrimination Map (SDM) statistical testing stats (mvpa.clfs.transerror.SummaryStatistics attribute) steps (mvpa.featsel.helpers.NBackHistoryStopCrit attribute) (mvpa.featsel.helpers.NStepsStopCrit attribute) stepwise_regression() (in module mvpa.clfs.libsmlrc) StoppingCriterion (class in mvpa.featsel.helpers) strategy (mvpa.datasets.splitters.Splitter attribute) substractBaseline() (mvpa.datasets.channel.ChannelDataset method) suggested software summaries (mvpa.clfs.transerror.SummaryStatistics attribute) summary() (mvpa.clfs.base.Classifier method) (mvpa.clfs.libsvmc.svm.SVM method) (mvpa.clfs.meta.CombinedClassifier method) (mvpa.clfs.meta.ProxyClassifier method) (mvpa.clfs.meta.TreeClassifier method) (mvpa.datasets.base.Dataset method) summary_labels() (mvpa.datasets.base.Dataset method) SummaryStatistics (class in mvpa.clfs.transerror) support vector machine SV (mvpa.clfs.libsvmc.svmc.svm_model attribute) sv (mvpa.mappers.svd.SVDMapper attribute) sv_coef (mvpa.clfs.libsvmc.svmc.svm_model attribute) SVD SVDMapper (class in mvpa.mappers.svd) SVM, [1], [2] (class in mvpa.clfs.libsvmc.svm) (class in mvpa.clfs.sg.svm) svm (mvpa.clfs.sg.svm.SVM attribute) svm_check_parameter() (in module mvpa.clfs.libsvmc.svmc) svm_check_probability_model() (in module mvpa.clfs.libsvmc.svmc) svm_cross_validation() (in module mvpa.clfs.libsvmc.svmc) svm_get_labels() (in module mvpa.clfs.libsvmc.svmc) svm_get_nr_class() (in module mvpa.clfs.libsvmc.svmc) svm_get_svm_type() (in module mvpa.clfs.libsvmc.svmc) svm_get_svr_probability() (in module mvpa.clfs.libsvmc.svmc) svm_load_model() (in module mvpa.clfs.libsvmc.svmc) svm_model (class in mvpa.clfs.libsvmc.svmc) svm_node_array() (in module mvpa.clfs.libsvmc.svmc) svm_node_array_destroy() (in module mvpa.clfs.libsvmc.svmc) svm_node_array_set() (in module mvpa.clfs.libsvmc.svmc) svm_node_matrix() (in module mvpa.clfs.libsvmc.svmc) svm_node_matrix2numpy_array() (in module mvpa.clfs.libsvmc.svmc) svm_node_matrix_destroy() (in module mvpa.clfs.libsvmc.svmc) svm_node_matrix_set() (in module mvpa.clfs.libsvmc.svmc) svm_parameter (class in mvpa.clfs.libsvmc.svmc) svm_predict() (in module mvpa.clfs.libsvmc.svmc) svm_predict_probability() (in module mvpa.clfs.libsvmc.svmc) svm_predict_values() (in module mvpa.clfs.libsvmc.svmc) svm_problem (class in mvpa.clfs.libsvmc.svmc) svm_save_model() (in module mvpa.clfs.libsvmc.svmc) svm_set_verbosity() (in module mvpa.clfs.libsvmc.svmc) svm_train() (in module mvpa.clfs.libsvmc.svmc) svm_type (mvpa.clfs.libsvmc.svmc.svm_parameter attribute) SWIG syntactic sugaring

T

t0 (mvpa.datasets.channel.ChannelDataset attribute) (mvpa.misc.io.eepbin.EEPBin attribute) table2string() (in module mvpa.base.dochelpers) tail (mvpa.clfs.stats.NullDist attribute) TailSelector (class in mvpa.featsel.helpers) Tal2MNI_Lancaster07FSL() (in module mvpa.atlases.transformation) Tal2MNI_Lancaster07pooled() (in module mvpa.atlases.transformation) Tal2MNI_YOHflirt() (in module mvpa.atlases.transformation) TaskPLS (class in mvpa.measures.pls) testAllDependencies() (in module mvpa.base.externals) testdataset (mvpa.clfs.meta.FeatureSelectionClassifier attribute) text (mvpa.atlases.base.Label attribute) text() (mvpa.base.report.Report method) textbook threshold (mvpa.featsel.helpers.FixedErrorThresholdStopCrit attribute) Time-compression tmodes (mvpa.misc.fsl.melodic.MelodicResults attribute) toarray() (mvpa.misc.bv.base.BrainVoyagerRTC method) (mvpa.misc.fsl.base.McFlirtParams method) todo toEvents() (mvpa.misc.fsl.base.FslEV3 method) (mvpa.misc.io.base.SampleAttributes method)

tofile() (mvpa.misc.fsl.base.FslEV3 method) (mvpa.misc.fsl.base.McFlirtParams method) (mvpa.misc.io.base.ColumnData method) (mvpa.misc.io.base.SampleAttributes method) toRealSpace() (mvpa.atlases.transformation.SpaceTransformation method) toVoxelSpace() (mvpa.atlases.transformation.SpaceTransformation method) tr (mvpa.misc.fsl.melodic.MelodicResults attribute) train() (mvpa.clfs.base.Classifier method) (mvpa.clfs.meta.PredictionsCombiner method) (mvpa.mappers.base.ChainMapper method) (mvpa.mappers.base.CombinedMapper method) (mvpa.mappers.base.Mapper method) (mvpa.mappers.base.ProjectionMapper method) (mvpa.mappers.lle.LLEMapper method) (mvpa.mappers.samplegroup.SampleGroupMapper method) (mvpa.mappers.som.SimpleSOMMapper method) traindataset (mvpa.clfs.sg.svm.SVM attribute) trained (mvpa.clfs.base.Classifier attribute) transerror (mvpa.algorithms.cvtranserror.CrossValidatedTransferError attribute) transfer error TransferError (class in mvpa.clfs.transerror) TransformationBase (class in mvpa.atlases.transformation) transformer (mvpa.measures.base.DatasetMeasure attribute) transformWithBoxcar() (in module mvpa.misc.support) TreeClassifier (class in mvpa.clfs.meta) truevar_per_ic (mvpa.misc.fsl.melodic.MelodicResults attribute) TScoredFeaturewiseMeasure (class in mvpa.measures.splitmeasure) TuebingenMEG (class in mvpa.misc.io.meg) TuebingenMEGSensorLocations (class in mvpa.misc.io.base) TypeProxy (class in mvpa.atlases.transformation)

U

Ubuntu UC (mvpa.datasets.base.Dataset attribute) UL (mvpa.datasets.base.Dataset attribute) ulabels (mvpa.clfs.gnb.GNB attribute) uniquechunks (mvpa.datasets.base.Dataset attribute) uniquelabels (mvpa.datasets.base.Dataset attribute)

uniqueValues (mvpa.misc.attributes.AttributeWithUnique attribute) unittests univariate UnknownStateError (class in mvpa.misc.exceptions) untrain() (mvpa.clfs.base.Classifier method) (mvpa.clfs.gnb.GNB method) (mvpa.clfs.gpr.GPR method) (mvpa.clfs.knn.kNN method) (mvpa.clfs.libsvmc.svm.SVM method) (mvpa.clfs.meta.BoostedClassifier method) (mvpa.clfs.meta.ClassifierCombiner method) (mvpa.clfs.meta.CombinedClassifier method) (mvpa.clfs.meta.FeatureSelectionClassifier method) (mvpa.clfs.meta.ProxyClassifier method) (mvpa.clfs.meta.TreeClassifier method) (mvpa.clfs.sg.svm.SVM method) (mvpa.clfs.transerror.ClassifierError method) (mvpa.featsel.base.CombinedFeatureSelection method) (mvpa.featsel.base.FeatureSelection method) (mvpa.featsel.base.FeatureSelectionPipeline method) (mvpa.featsel.base.SensitivityBasedFeatureSelection method) (mvpa.measures.base.BoostedClassifierSensitivityAnalyzer method) (mvpa.measures.base.CombinedFeaturewiseDatasetMeasure method) (mvpa.measures.base.DatasetMeasure method) (mvpa.measures.base.ProxyClassifierSensitivityAnalyzer method) (mvpa.measures.base.Sensitivity method) (mvpa.measures.base.SplitFeaturewiseDatasetMeasure method)

V

validation data value (mvpa.misc.attributes.CollectableAttribute attribute) (mvpa.misc.param.Parameter attribute) var (mvpa.mappers.pca.PCAMapper attribute) Variance1SVFx (class in mvpa.misc.errorfx) variances (mvpa.clfs.gnb.GNB attribute)

verbosity, [1] version (mvpa.atlases.base.XMLBasedAtlas attribute) version_to_tuple() (in module mvpa.misc.support) voxdim (mvpa.atlases.base.XMLBasedAtlas attribute) VProperty (class in mvpa.misc.vproperty)

W

Warehouse (class in mvpa.clfs.warehouse) warning, [1] WarningLog (class in mvpa.base) WaveletPacketMapper (class in mvpa.mappers.wavelet) WaveletTransformationMapper (class in mvpa.mappers.wavelet) weight (mvpa.clfs.libsvmc.svmc.svm_parameter attribute) Weight Vector weight_label (mvpa.clfs.libsvmc.svmc.svm_parameter attribute) weights (mvpa.clfs.enet.ENET attribute) (mvpa.clfs.lars.LARS attribute) (mvpa.clfs.smlr.SMLR attribute)

where() (mvpa.datasets.base.Dataset method) whichSet() (mvpa.misc.state.Collection method) Windows Windows installer working data wr1996() (in module mvpa.misc.data_generators) write() (mvpa.base.report.Report method) WTF (class in mvpa.base.info) wtf() (in module mvpa.base.info)

X

x (mvpa.clfs.libsvmc.svmc.svm_problem attribute) XAVRSensorLocations (class in mvpa.misc.io.base) xml() (mvpa.base.report.Report method)

XMLAtlasException (class in mvpa.atlases.base) XMLBasedAtlas (class in mvpa.atlases.base) xuniqueCombinations() (in module mvpa.misc.support)

Y

y (mvpa.clfs.libsvmc.svmc.svm_problem attribute)

Z

zscore() (in module mvpa.datasets.miscfx) (mvpa.datasets.base.Dataset method)

ZScoreMapper (class in mvpa.mappers.zscore)