Source Code for Module mvpa.suite

  1  # emacs: -*- mode: python; py-indent-offset: 4; indent-tabs-mode: nil -*- 
  2  # vi: set ft=python sts=4 ts=4 sw=4 et: 
  3  ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ## 
  4  # 
  5  #   See COPYING file distributed along with the PyMVPA package for the 
  6  #   copyright and license terms. 
  7  # 
  8  ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ## 
  9  """MultiVariate Pattern Analysis -- load helper 
 10   
 11  If you don't like to specify exact location of any particular 
 12  functionality within PyMVPA, please simply:: 
 13   
 14    from mvpa.suite import * 
 15   
 16  or 
 17   
 18    import mvpa.suite 
 19   
 20  """ 
 21   
 22  __docformat__ = 'restructuredtext' 
 23   
 24   
 25  from mvpa import * 
 26   
 27  from mvpa.base import * 
 28  from mvpa.base.config import * 
 29  from mvpa.base.verbosity import * 
 30  from mvpa.base.info import * 
 31   
 32  if externals.exists('reportlab'): 
 33      from mvpa.base.report import * 
 34  else: 
 35      from mvpa.base.report_dummy import Report 
 36   
 37   
 38  from mvpa.algorithms.cvtranserror import * 
 39  from mvpa.algorithms.hyperalignment import * 
 40   
 41  from mvpa import clfs 
 42  from mvpa.clfs.distance import * 
 43  from mvpa.clfs.kernel import * 
 44  from mvpa.clfs.base import * 
 45  from mvpa.clfs.meta import * 
 46  from mvpa.clfs.knn import * 
 47  if externals.exists('lars'): 
 48      from mvpa.clfs.lars import * 
 49  if externals.exists('elasticnet'): 
 50      from mvpa.clfs.enet import * 
 51  if externals.exists('glmnet'): 
 52      from mvpa.clfs.glmnet import * 
 53  from mvpa.clfs.smlr import * 
 54  from mvpa.clfs.blr import * 
 55  from mvpa.clfs.gnb import * 
 56  from mvpa.clfs.stats import * 
 57  if externals.exists('libsvm') or externals.exists('shogun'): 
 58      from mvpa.clfs.svm import * 
 59  from mvpa.clfs.transerror import * 
 60  from mvpa.clfs.warehouse import * 
 61   
 62  from mvpa import datasets 
 63  from mvpa.datasets import * 
 64  # just to make testsuite happy 
 65  from mvpa.datasets.base import * 
 66  from mvpa.datasets.meta import * 
 67  from mvpa.datasets.masked import * 
 68  from mvpa.datasets.miscfx import * 
 69  from mvpa.datasets.channel import * 
 70  from mvpa.datasets.event import * 
 71  from mvpa.datasets.eep import * 
 72  if externals.exists('nifti'): 
 73      from mvpa.datasets.nifti import * 
 74   
 75  from mvpa.datasets import splitters 
 76  from mvpa.datasets.splitters import * 
 77   
 78  from mvpa import featsel 
 79  from mvpa.featsel.base import * 
 80  from mvpa.featsel.helpers import * 
 81  from mvpa.featsel.ifs import * 
 82  from mvpa.featsel.rfe import * 
 83   
 84  from mvpa import mappers 
 85  #from mvpa.mappers import * 
 86  from mvpa.mappers.base import * 
 87  from mvpa.mappers.metric import * 
 88  from mvpa.mappers.mask import * 
 89  from mvpa.mappers.svd import * 
 90  from mvpa.mappers.procrustean import * 
 91  from mvpa.mappers.boxcar import * 
 92  from mvpa.mappers.samplegroup import * 
 93  from mvpa.mappers.som import * 
 94  from mvpa.mappers.array import * 
 95  if externals.exists('scipy'): 
 96      from mvpa.mappers.zscore import ZScoreMapper 
 97  if externals.exists('mdp'): 
 98      from mvpa.mappers.pca import * 
 99      from mvpa.mappers.ica import * 
100  if externals.exists('mdp ge 2.4'): 
101      from mvpa.mappers.lle import * 
102   
103  from mvpa import measures 
104  from mvpa.measures.anova import * 
105  from mvpa.measures.glm import * 
106  from mvpa.measures.irelief import * 
107  from mvpa.measures.base import * 
108  from mvpa.measures.noiseperturbation import * 
109  from mvpa.measures.searchlight import * 
110  from mvpa.measures.splitmeasure import * 
111  from mvpa.measures.corrstability import * 
112   
113  from mvpa.support.copy import * 
114  from mvpa.misc.fx import * 
115  from mvpa.misc.errorfx import * 
116  from mvpa.misc.cmdline import * 
117  from mvpa.misc.data_generators import * 
118  from mvpa.misc.exceptions import * 
119  from mvpa.misc import * 
120  from mvpa.misc.io import * 
121  from mvpa.misc.io.eepbin import * 
122  from mvpa.misc.io.meg import * 
123  if externals.exists('cPickle') and externals.exists('gzip'): 
124      from mvpa.misc.io.hamster import * 
125  from mvpa.misc.fsl import * 
126  from mvpa.misc.bv import * 
127  from mvpa.misc.bv.base import * 
128  from mvpa.misc.param import * 
129  from mvpa.misc.state import * 
130  from mvpa.misc.support import * 
131  from mvpa.misc.transformers import * 
132   
133  if externals.exists("nifti"): 
134      from mvpa.misc.fsl.melodic import * 
135   
136  if externals.exists("pylab"): 
137      from mvpa.misc.plot import * 
138      from mvpa.misc.plot.erp import * 
139      if externals.exists(['griddata', 'scipy']): 
140          from mvpa.misc.plot.topo import * 
141      if externals.exists('nifti'): 
142          from mvpa.misc.plot.mri import plotMRI 
143   
144  if externals.exists("scipy"): 
145      from mvpa.support.stats import scipy 
146      from mvpa.measures.corrcoef import * 
147      from mvpa.measures.ds import * 
148      from mvpa.clfs.ridge import * 
149      from mvpa.clfs.plr import * 
150      from mvpa.misc.stats import * 
151      from mvpa.clfs.gpr import * 
152   
153  if externals.exists("pywt"): 
154      from mvpa.mappers.wavelet import * 
155   
156  if externals.exists("pylab"): 
157      import pylab as P 
158   
159  if externals.exists("lxml") and externals.exists("nifti"): 
160      from mvpa.atlases import * 
161